36787 HMGB-UBF_HMG-box
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
36787 chr_12 HMGB-UBF_HMG-box 195105 195725 + HMGB-UBF_HMG-box
NCBI ID Ensembl Genomes exon ID
7443246 Thaps36787.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0320
Normalized Mean Residue
Thaps_bicluster_0065
0.48
(bd722) NA
0.8113
hypothetical protein
0.7546
(bd1071) NA
0.7507
hypothetical protein
0.746
0.7333
(Tp_fungal_TRF1b) regulator [Rayko]
0.7268
(bd1983) RecA-like_NTPases superfamily
0.7254
PP2Cc
0.7238
0.7234
POLBc superfamily
0.7169
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins.... cl00082 77.2829 8.76E-19 63 - 128 specific 238686
HMG-box superfamily High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and... - 77.2829 8.76E-19 63 - 128 superfamily 260179
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_12674 PHATRDRAFT_12674 Not available 260161 59608 Not available Not available Not available
KEGG description KEGG Pathway
Not available Not available
GO:0000785 GO:0003677 GO:0005634 GO:0006355 -

chromatin

Details: 
The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome.
GO Category: 
CC

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP
Log in to post comments