37963 NOT2_3_5
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
37963 chr_17 NOT2_3_5 368626 369282 + NOT2_3_5

Synonyms

NCBI ID Ensembl Genomes exon ID
7442117 Thaps37963.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0252

Most Highly Correlated Transcripts

15161

Bromodomain superfamily
0.9041

6630

hypothetical protein
0.9024

36275

PLN03239
0.9008

1906

hypothetical protein
0.8942

38111

Mito_carr
0.8924

8500

PRP38 superfamily
0.8924

bd1192

(bd1192) Acyl_ACP_Desat
0.8917

268257

fabG
0.8909

10487

hypothetical protein
0.8839

40218

NADB_Rossmann superfamily
0.8822

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NOT2_3_5 NOT2 / NOT3 / NOT5 family; NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that negatively... cl02384 187.546 2.53E-60 82 - 213 specific 252415
NOT2_3_5 superfamily NOT2 / NOT3 / NOT5 family; NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that negatively... - 187.546 2.53E-60 82 - 213 superfamily 261268

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_9231 PHATRDRAFT_9231 144953 152226 427005 Cre04.g227350.t1.1 AT5G18230.1 350857

KEGG

KEGG description KEGG Pathway
RNA degradation map03018

GO Terms

GO:0005634 GO:0030528 GO:0045449 -

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0030528

NA

Details: 
NA
GO Category: 
NA

GO:0045449

NA

Details: 
NA
GO Category: 
NA

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