38095 UPF0014 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38095 chr_18 UPF0014 superfamily 608802 610496 + UPF0014 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7443019 Thaps38095.1, Thaps38095.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0188

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0048
 0.39

Most Highly Correlated Transcripts

25734

hypothetical protein
0.8709

6028

NA
0.8666

11490

hypothetical protein
0.8611

6299

Thr-dehyd
0.8608

264268

REC
0.8594

21223

hypothetical protein
0.8543

22464

(FUM1) PLN00133
0.8535

263269

(PSY3) Isoprenoid_Biosyn_C1 superfamily
0.8444

11746

hypothetical protein
0.8435

269988

tRNA_Me_trans
0.8407

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABC_ATPase ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... cl17201 123.509 3.54E-33 337 - 519 specific 213179
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 123.509 3.54E-33 337 - 519 superfamily 266551
UPF0014 superfamily Uncharacterized protein family (UPF0014); Uncharacterised protein family (UPF0014). - 138.995 1.43E-37 31 - 220 superfamily 241854
cbiO cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of the... - 82.471 3.46E-18 345 - 517 multi-dom 130234

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0016887 GO:0000166 GO:0017111 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0016887

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

Add comment

Log in to post comments