38136 RRM2_PHIP1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38136 chr_18 RRM2_PHIP1 616596 616943 + RRM2_PHIP1

Synonyms

NCBI ID Ensembl Genomes exon ID
7444807 Thaps38136.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0230

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0151
 0.31

Most Highly Correlated Transcripts

bd1828

(bd1828) NA
0.868

bd1876

(bd1876) NatB_MDM20 superfamily
0.8364

37965

S1_like superfamily
0.8224

25799

TYW3 superfamily
0.8062

268688

hypothetical protein
0.8051

27873

PLN02274
0.8018

21462

(rpoT) rpot-like RNA polymerase
0.7985

23079

zf-LYAR
0.7968

bd621

(bd621) NA
0.792

262326

ran binding protein 4-like protein
0.7887

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM2_PHIP1 RNA recognition motif 2 in Arabidopsis thaliana phragmoplastin interacting protein 1 (PHIP1) and... cl17169 112.87 2.35E-33 2 - 74 specific 240718
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 112.87 2.35E-33 2 - 74 superfamily 266524
COG0724 RNA-binding proteins (RRM domain) [General function prediction only] - 80.7614 1.60E-19 2 - 82 multi-dom 223796

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_bd286 PHATRDRAFT_bd286 161797 169279 Not available Cre06.g275100.t1.2 AT1G48920.1 353718

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003676 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

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