23079 zf-LYARThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
23079	chr_6	zf-LYAR	753146	754939	+	zf-LYAR

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448611	Thaps23079.1, Thaps23079.3, Thaps23079.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0219

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0278	0.24	66 20

Most Highly Correlated Transcripts

bd1876 (bd1876) NatB_MDM20 superfamily 0.9405	1374 RRM 0.916	37965 S1_like superfamily 0.9135	bd96 (bd96) eIF-3_zeta 0.9095	22582 S1 0.9094	268678 (Tp_Myb2R3) ZUO1 0.909
268331 WD40 0.9053	36434 DUF1253 0.9014	2772 Utp14 0.8999	261462 hypothetical protein 0.8976

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
zf-LYAR superfamily		LYAR-type C2HC zinc finger; This C2HC zinc finger is found in LYAR proteins, which are involved in...	-	58.7089	1.03E-11	31 - 58	superfamily	149752
zf-LYAR superfamily		LYAR-type C2HC zinc finger; This C2HC zinc finger is found in LYAR proteins, which are involved in...	-	58.7089	1.03E-11	31 - 58	superfamily	149752

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
269961		Not available	240142	238392	237390	Not available	AT2G19385.1	346613

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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