38769 PLN00033
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38769 chr_22 PLN00033 546126 547346 - PLN00033

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Thaps38769.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0071

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0174
 0.29

Most Highly Correlated Transcripts

38769

PLN00033
1

bd1645

(bd1645) tpt
0.9678

bd1306

(bd1306) NA
0.953

bd208

(bd208) DUF3529
0.9394

bd1403

(bd1403) NA
0.9299

7677

(DDE) diadinoxanthin de-epoxidase
0.9297

bd1380

(bd1380) ycf39
0.9284

ThpsCp068

(psaL) photosystem I subunit XI
0.9276

24572

plant_peroxidase_like
0.9273

23291

hypothetical protein
0.927

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PSII_BNR superfamily Photosynthesis system II assembly factor YCF48; YCF48 is one of several assembly factors of the... - 463.672 3.78E-163 76 - 402 superfamily 259007
PLN00033 photosystem II stability/assembly factor; Provisional - 554.04 0 20 - 403 multi-dom 215035

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_13895 PHATRDRAFT_13895 259589 314068 461307 Cre06.g273700.t1.2 AT5G23120.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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