38776 BOP1NT
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38776 chr_23 BOP1NT 123612 126455 - BOP1NT

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0221

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0110
 0.24

Most Highly Correlated Transcripts

39022

COG2319
0.9266

269434

COG1092
0.9203

6250

reductase
0.9184

268688

hypothetical protein
0.9164

23862

Syo1_like superfamily
0.9149

21082

Cupin_8 superfamily
0.9135

40341

WD40 superfamily
0.9052

268735

(GPB1) WD40
0.8987

20985

COG5593
0.898

25129

hypothetical protein
0.8928

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
BOP1NT BOP1NT (NUC169) domain; This N terminal domain is found in BOP1-like WD40 proteins. cl19763 317.247 9.48E-102 160 - 421 specific 254629
BOP1NT superfamily BOP1NT (NUC169) domain; This N terminal domain is found in BOP1-like WD40 proteins. - 317.247 9.48E-102 160 - 421 superfamily 268116
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 107.421 1.76E-25 437 - 793 superfamily 238121
COG2319 FOG: WD40 repeat [General function prediction only] - 79.3623 8.58E-16 437 - 792 multi-dom 225201

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_16814 PHATRDRAFT_16814 190887 183181 212568 Cre10.g417950.t1.2 AT2G40360.1 248457

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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