38991 COG1565Thalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
38991	chr_1	COG1565	494479	497195	+	COG1565

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449737	Thaps38991.3, Thaps38991.5, Thaps38991.4, Thaps38991.1, Thaps38991.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0194

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0247	0.36	2.5 17

Most Highly Correlated Transcripts

25076 S1_like superfamily 0.9153	12836 EEP superfamily 0.9033	25162 hypothetical protein 0.8977	6592 TroA-like superfamily 0.8868	24529 hypothetical protein 0.8862	269593 (RPT4) RPT1 0.8845
23747 hypothetical protein 0.872	1674 hypothetical protein 0.8679	10111 Aldo_ket_red 0.8667	bd392 (bd392) DEXDc 0.8665

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Methyltransf_28		Putative S-adenosyl-L-methionine-dependent methyltransferase; This family is a putative S-adenosyl-...	cl17173	186.69	4.36E-54	348 - 590	specific	251439
AdoMet_MTases superfamily		S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases...	-	186.69	4.36E-54	348 - 590	superfamily	266528
COG1565		Uncharacterized conserved protein [Function unknown]	-	223.372	8.01E-66	295 - 713	multi-dom	224481

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_15641	PHATRDRAFT_15641	185421	322635	61513	Cre02.g096400.t1.2	AT3G28700.1	418303

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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