40871 COG1444
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
40871 chr_6 COG1444 78734 82777 - COG1444

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0220

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0166
 0.18

Most Highly Correlated Transcripts

36434

DUF1253
0.9446

40529

COG2319
0.9329

21173

hypothetical protein
0.9296

32395

RNA_pol
0.9271

23650

hypothetical protein
0.9221

268735

(GPB1) WD40
0.9212

40884

(RPA1) RNAP_I_RPA1_N
0.9198

2772

Utp14
0.9187

23900

hypothetical protein
0.9181

17145

WBS_methylT
0.9179

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GNAT_acetyltr_2 superfamily GNAT acetyltransferase 2; This domain has N-acetyltransferase activity. It has a GCN5-related N-... - 255.088 1.67E-78 577 - 814 superfamily 258015
GNAT_acetyltr_2 superfamily GNAT acetyltransferase 2; This domain has N-acetyltransferase activity. It has a GCN5-related N-... - 255.088 1.67E-78 577 - 814 superfamily 258015
Helicase_RecD superfamily Helicase; This domain contains a P-loop (Walker A) motif, suggesting that it has ATPase activity,... - 175.459 3.87E-50 327 - 538 superfamily 253025
Helicase_RecD superfamily Helicase; This domain contains a P-loop (Walker A) motif, suggesting that it has ATPase activity,... - 175.459 3.87E-50 327 - 538 superfamily 253025
DUF1726 superfamily Domain of unknown function (DUF1726); This domain of unknown function is often found at the N-... - 131.879 1.20E-35 130 - 224 superfamily 149420
DUF1726 superfamily Domain of unknown function (DUF1726); This domain of unknown function is often found at the N-... - 131.879 1.20E-35 130 - 224 superfamily 149420
tRNA_bind_2 superfamily Possible tRNA binding domain; This domain, found at the C-terminus of tRNA(Met) cytidine... - 96.5749 3.61E-23 833 - 959 superfamily 258021
tRNA_bind_2 superfamily Possible tRNA binding domain; This domain, found at the C-terminus of tRNA(Met) cytidine... - 96.5749 3.61E-23 833 - 959 superfamily 258021
COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] - 595.896 0 20 - 980 multi-dom 224361

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_46516 PHATRDRAFT_46516 188271 35740 63124 Cre03.g192850.t1.2 AT3G57940.1 554043

KEGG

KEGG description KEGG Pathway
Ribosome biogenesis in eukaryotes map03008

GO Terms

GO:0008152 GO:0016491 -

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

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