4287 PBPb
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
4287 chr_4 PBPb 655155 657955 + PBPb

Synonyms

NCBI ID Ensembl Genomes exon ID
7447491 Thaps4287.4, Thaps4287.1, Thaps4287.2, Thaps4287.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0449

Most Highly Correlated Transcripts

12836

EEP superfamily
0.9256

22318

hypothetical protein
0.9099

21026

PRP21_like_P superfamily
0.8908

269169

Beach
0.889

5066

hypothetical protein
0.8874

22265

hypothetical protein
0.8868

23560

hypothetical protein
0.8865

8130

hypothetical protein
0.8863

22202

CHD
0.8858

23467

hypothetical protein
0.8856

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PBPb superfamily Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-... - 81.2654 3.65E-17 366 - 586 superfamily 238078
PBPb superfamily Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-... - 81.2654 3.65E-17 366 - 586 superfamily 238078
PBPb Bacterial periplasmic substrate-binding proteins; bacterial proteins, eukaryotic ones are in PBPe - 87.3837 3.35E-19 370 - 579 multi-dom 214497

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005215 GO:0006810 GO:0030288 -

GO:0005215

transporter activity

Details: 
Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
GO Category: 
MF

GO:0006810

transport

Details: 
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0030288

outer membrane-bounded periplasmic space

Details: 
The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin cell wall.
GO Category: 
CC

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