5728 HA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
5728 chr_5 HA 1936196 1938981 + HA

Synonyms

NCBI ID Ensembl Genomes exon ID
7442266 Thaps5728.4, Thaps5728.2, Thaps5728.3, Thaps5728.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0478

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0036
 0.41

Most Highly Correlated Transcripts

8269

(Tp_CXC1) regulator [Rayko]
0.8999

12899

AAA
0.8949

5689

HA
0.8898

268825

COG5647
0.876

5688

hypothetical protein
0.873

21220

KU superfamily
0.8663

22882

PUB
0.8656

3617

SRPBCC superfamily
0.8651

25442

hypothetical protein
0.861

7365

Cupin_8 superfamily
0.8607

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HA superfamily Helicase associated domain; This short domain is found in multiple copies in bacterial helicase... - 59.2413 7.70E-11 691 - 755 superfamily 251968
HA superfamily Helicase associated domain; This short domain is found in multiple copies in bacterial helicase... - 59.2413 7.70E-11 691 - 755 superfamily 251968
HA superfamily Helicase associated domain; This short domain is found in multiple copies in bacterial helicase... - 59.2413 7.70E-11 691 - 755 superfamily 251968
HA superfamily Helicase associated domain; This short domain is found in multiple copies in bacterial helicase... - 59.2413 7.70E-11 691 - 755 superfamily 251968
HA superfamily Helicase associated domain; This short domain is found in multiple copies in bacterial helicase... - 59.2413 7.70E-11 691 - 755 superfamily 251968
HA superfamily Helicase associated domain; This short domain is found in multiple copies in bacterial helicase... - 59.2413 7.70E-11 691 - 755 superfamily 251968

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 262479 Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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