5855 AAA_12
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
5855 chr_6 AAA_12 48808 52575 - AAA_12

Synonyms

NCBI ID Ensembl Genomes exon ID
7446389 Thaps5855.3, Thaps5855.2, Thaps5855.1, Thaps5855.4

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0427

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0032
 0.47

Most Highly Correlated Transcripts

bd1883

(bd1883) NA
0.6467

5778

hypothetical protein
0.6301

20330

zf-Tim10_DDP
0.6292

2481

Ion_trans
0.6263

22112

Vps54 superfamily
0.6262

10753

hypothetical protein
0.6199

23878

hypothetical protein
0.6185

25079

hypothetical protein
0.6167

20579

hypothetical protein
0.6099

10191

SUL1
0.6095

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AAA_12 superfamily AAA domain; This family of domains contain a P-loop motif that is characteristic of the AAA... - 158.866 8.87E-44 852 - 1069 superfamily 257490
AAA_12 superfamily AAA domain; This family of domains contain a P-loop motif that is characteristic of the AAA... - 158.866 8.87E-44 852 - 1069 superfamily 257490
TIGR00376 DNA helicase, putative; The gene product may represent a DNA helicase. Eukaryotic members of this... - 163.061 6.06E-42 508 - 1098 multi-dom 232945

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 236633 195979 462193 Cre04.g218900.t1.1 Not available 298238

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004197 GO:0006508 -

GO:0004197

cysteine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

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