6133 UBCcThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
6133	chr_6	UBCc	788902	789702	+	UBCc

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448618	Thaps6133.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0374

Most Highly Correlated Transcripts

29469 hypothetical protein 0.8991	36641 Aldolase_Class_I superfamily 0.8984	36879 BolA 0.895	3348 hypothetical protein 0.8942	3229 hypothetical protein 0.894	268257 fabG 0.893
3570 PP2Cc 0.8929	9746 RNA_pol_Rpb4 0.8925	40206 UAA 0.8908	20763 CAF1 0.8892

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
UBCc		Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated...	cl00154	158.134	4.39E-48	33 - 176	specific	238117
UBCc superfamily		Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated...	-	158.134	4.39E-48	33 - 176	superfamily	260221

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	47260	Not available	Not available	400954

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0004840 GO:0006464 GO:0006512 GO:0004842 -

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