6361 PTZ00318
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
6361 chr_6 PTZ00318 1388875 1391237 - PTZ00318

Synonyms

NCBI ID Ensembl Genomes exon ID
7442728 Thaps6361.5, Thaps6361.3, Thaps6361.2, Thaps6361.4, Thaps6361.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0033

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0059
 0.44

Most Highly Correlated Transcripts

bd694

(bd694) NA
0.8284

bd693

(bd693) HSF_DNA-bind superfamily
0.8238

bd887

(bd887) NA
0.8027

9776

hypothetical protein
0.8005

8232

hypothetical protein
0.7995

16075

tpt
0.7978

19977

TRX_family
0.7953

4070

cysteine_hydrolases
0.7926

26769

ERG4_ERG24 superfamily
0.7921

37934

GRX_PICOT_like
0.7904

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Pyr_redox superfamily Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II... - 63.3463 2.47E-12 358 - 438 superfamily 249559
Pyr_redox superfamily Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II... - 63.3463 2.47E-12 358 - 438 superfamily 249559
PTZ00318 NADH dehydrogenase-like protein; Provisional - 272.796 7.07E-84 184 - 669 multi-dom 185553

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Oxidative phosphorylation map00190

GO Terms

GO:0006118 GO:0016491 GO:0015036 GO:0005216 GO:0006811 GO:0016020 GO:0003954 -

GO:0006118

NA

Details: 
NA
GO Category: 
NA

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0015036

disulfide oxidoreductase activity

Details: 
Catalysis of the reaction: substrate with reduced sulfide groups = substrate with oxidized disulfide bonds.
GO Category: 
MF

GO:0005216

ion channel activity

Details: 
Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism.
GO Category: 
MF

GO:0006811

ion transport

Details: 
The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

GO:0003954

NADH dehydrogenase activity

Details: 
Catalysis of the reaction: NADH + H+ + acceptor = NAD+ + reduced acceptor.
GO Category: 
MF

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