661 Cob-chelat-sub
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
661 chr_10 Cob-chelat-sub 473285 476190 - Cob-chelat-sub

Synonyms

NCBI ID Ensembl Genomes exon ID
7445876 Thaps661.2, Thaps661.4, Thaps661.5, Thaps661.1, Thaps661.6, Thaps661.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0332

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0050
 0.45

Most Highly Correlated Transcripts

bd1823

(bd1823) SCP superfamily
0.8927

bd1877

(bd1877) NA
0.826

bd938

(bd938) PBP2_NikA_DppA_OppA_like superfamily
0.7836

bd1851

(bd1851) NA
0.7649

bd690

(bd690) NA
0.7498

bd1692

(bd1692) NA
0.74

bd1890

(bd1890) NA
0.737

bd738

(bd738) NA
0.7286

bd1801

(bd1801) NA
0.7243

bd1822

(bd1822) SCP superfamily
0.7178

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In... cl00057 193.261 6.34E-57 659 - 861 specific 238728
vWFA superfamily Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von... - 193.261 6.34E-57 659 - 861 superfamily 260163
Cob-chelat-sub cobaltochelatase subunit; Cobaltochelatase is responsible for the insertion of cobalt into the... - 575.483 0 175 - 848 multi-dom 233870

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 175692 Not available 420555 Cre05.g242000.t1.2 AT1G08520.1 Not available

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0015979 GO:0015995 GO:0016851 GO:0000166 GO:0017111 -

GO:0015979

photosynthesis

Details: 
The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
GO Category: 
BP

GO:0015995

chlorophyll biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors.
GO Category: 
BP

GO:0016851

magnesium chelatase activity

Details: 
Catalysis of the reaction: ATP + H(2)O + Mg(2+) + protoporphyrin IX = ADP + 2 H(+) + magnesium protoporphyrin IX + phosphate.
GO Category: 
MF

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

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