6636 Glyco_hydro_18
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
6636 chr_7 Glyco_hydro_18 81787 86292 + Glyco_hydro_18

Synonyms

NCBI ID Ensembl Genomes exon ID
7450632 Thaps6636.4, Thaps6636.2, Thaps6636.1, Thaps6636.3, Thaps6636.5

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0465

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0158
 0.37

Most Highly Correlated Transcripts

bd1949

(bd1949) NA
0.9128

bd1870

(bd1870) NA
0.9021

bd446

(bd446) HrpA
0.8663

bd1777

(bd1777) NA
0.8631

5769

hypothetical protein
0.8628

bd1100

(bd1100) NA
0.8595

11038

hypothetical protein
0.8573

25181

hypothetical protein
0.8452

bd518

(bd518) p450 superfamily
0.8367

bd392

(bd392) DEXDc
0.8289

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GH18_chitinase-like superfamily The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer... - 99.6272 2.09E-22 487 - 764 superfamily 263970
Glyco_hydro_18 Glycosyl hydrolases family 18; Glycosyl hydrolases family 18. - 116.45 8.30E-28 427 - 761 multi-dom 250070

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0008152 GO:0016787 GO:0005576 GO:0006030 GO:0008061 -

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0016787

hydrolase activity

Details: 
Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
GO Category: 
MF

GO:0005576

extracellular region

Details: 
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
GO Category: 
CC

GO:0006030

chitin metabolic process

Details: 
The chemical reactions and pathways involving chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues.
GO Category: 
BP

GO:0008061

chitin binding

Details: 
Interacting selectively and non-covalently with chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues.
GO Category: 
MF

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