6760 (Tp_sigma70.7) regulator [Rayko]
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
6760 chr_7 (Tp_sigma70.7) regulator [Rayko] 413265 414809 + regulator [Rayko]
NCBI ID Ensembl Genomes exon ID
7446212 Thaps6760.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0041
Normalized Mean Residue
Thaps_bicluster_0088
0.37
AarF
0.9036
hypothetical protein
0.8959
HCO3_cotransp superfamily
0.8894
Uup
0.8824
TIM_phosphate_binding superfamily
0.8797
TRX_reduct
0.879
hypothetical protein
0.8732
hypothetical protein
0.8711
PRK05134
0.8639
Patatin_and_cPLA2 superfamily
0.8613
Not available
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_50183 PHATRDRAFT_50183 257353 Not available Not available Not available Not available Not available
KEGG description KEGG Pathway
Not available Not available
GO:0003677 GO:0003700 GO:0006352 GO:0006355 GO:0016987 -

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

DNA-templated transcription, initiation

Details: 
Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription.
GO Category: 
BP

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

sigma factor activity

Details: 
A sigma factor is the promoter specificity subunit of eubacterial-type multisubunit RNA polymerases, those whose core subunit composition is often described as alpha(2)-beta-beta-prime. (This type of multisubunit RNA polymerase complex is known to be found in eubacteria and plant plastids). Although sigma does not bind DNA on its own, when combined with the core to form the holoenzyme, this binds specifically to promoter sequences, with the sigma factor making sequence specific contacts with the promoter elements. The sigma subunit is released from the elongating form of the polymerase and is thus free to act catalytically for multiple RNA polymerase core enzymes.
GO Category: 
MF
Log in to post comments