6988 PTZ00401
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
6988 chr_7 PTZ00401 979911 981374 + PTZ00401

Synonyms

NCBI ID Ensembl Genomes exon ID
7444129 Thaps6988.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0016

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0142
 0.24

Most Highly Correlated Transcripts

268592

VDE superfamily
0.9476

22546

hypothetical protein
0.9468

22076

violaxanthin de-epoxidase-like 1
0.9444

bd208

(bd208) DUF3529
0.9164

574

PRK05444
0.915

bd1078

(bd1078) NA
0.9124

270253

(NTT8) hypothetical protein
0.9107

264039

(CYP2) p450 superfamily
0.9088

40193

NA
0.9081

bd1306

(bd1306) NA
0.9079

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA... cl00268 409.263 2.30E-140 157 - 482 specific 238399
class_II_aaRS-like_core superfamily Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA... - 409.263 2.30E-140 157 - 482 superfamily 260313
AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces... cl19106 111.886 8.79E-30 36 - 137 specific 239815
Asp_Lys_Asn_RS_N superfamily Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (... - 111.886 8.79E-30 36 - 137 superfamily 267459
PTZ00401 aspartyl-tRNA synthetase; Provisional - 467.162 1.22E-159 2 - 487 multi-dom 173592

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_41016 PHATRDRAFT_41016 178869 300590 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Aminoacyl-tRNA biosynthesis map00970

GO Terms

GO:0004815 GO:0005524 GO:0006422 GO:0004812 GO:0005737 GO:0006418 GO:0003676 -

GO:0004815

aspartate-tRNA ligase activity

Details: 
Catalysis of the reaction: ATP + L-aspartate + tRNA(Asp) = AMP + diphosphate + L-aspartyl-tRNA(Asp).
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006422

aspartyl-tRNA aminoacylation

Details: 
The process of coupling aspartate to aspartyl-tRNA, catalyzed by aspartyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
GO Category: 
BP

GO:0004812

aminoacyl-tRNA ligase activity

Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO Category: 
MF

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0006418

tRNA aminoacylation for protein translation

Details: 
The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO Category: 
BP

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

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