8111 VIT1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
8111 chr_9 VIT1 802972 804162 - VIT1

Synonyms

NCBI ID Ensembl Genomes exon ID
7450956 Thaps8111.1, Thaps8111.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0490

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0032
 0.47

Most Highly Correlated Transcripts

4108

hypothetical protein
0.8752

bd153

(bd153) NA
0.8124

bd816

(bd816) NA
0.7308

bd799

(bd799) ZnMc_pappalysin_like
0.7075

bd693

(bd693) HSF_DNA-bind superfamily
0.7067

bd694

(bd694) NA
0.7036

bd1823

(bd1823) SCP superfamily
0.7025

bd810

(bd810) NA
0.7005

bd835

(bd835) DUF4137
0.6921

bd759

(bd759) NA
0.6899

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
VIT1 VIT family; This family includes the vacuolar Fe2+/Mn2+ uptake transporter, Ccc1 and the vacuolar... cl00278 131.272 4.00E-36 120 - 346 specific 251019
CCC1_like superfamily CCC1-related family of proteins; CCC1_like: This protein family includes the proteins related to... - 131.272 4.00E-36 120 - 346 superfamily 260320

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_37632 PHATRDRAFT_37632 Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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