821 (VPS4) AAA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
821 chr_19a_19 (VPS4) AAA 600460 601914 - AAA

Synonyms

NCBI ID Ensembl Genomes exon ID
7444348 Thaps821.2, Thaps821.3, Thaps821.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0012

Most Highly Correlated Transcripts

16075

tpt
0.906

23537

hypothetical protein
0.8988

268904

hypothetical protein
0.8976

21193

UBL
0.8975

261882

Thioredoxin_like superfamily
0.8895

32610

hypothetical protein
0.8888

261400

NA
0.8856

3032

CDC50
0.8853

37934

GRX_PICOT_like
0.8831

13393

PLN02321
0.8826

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... cl18944 98.3723 1.46E-24 158 - 296 specific 99707
AAA superfamily The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... - 98.3723 1.46E-24 158 - 296 superfamily 267297
MIT MIT (microtubule interacting and transport) domain; The MIT domain forms an asymmetric three-helix... cl00299 79.5675 1.43E-18 5 - 73 specific 146707
MIT superfamily MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is... - 79.5675 1.43E-18 5 - 73 superfamily 260336
Vps4_C superfamily Vps4 C terminal oligomerization domain; This domain is found at the C terminal of ATPase proteins... - 64.1989 4.08E-13 364 - 419 superfamily 204202
AAA ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety... - 83.9621 2.19E-19 161 - 298 multi-dom 214640

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_30898 PHATRDRAFT_30898 Not available Not available 447716 Not available AT2G27600.1 491946

KEGG

KEGG description KEGG Pathway
Endocytosis map04144

GO Terms

GO:0000166 GO:0017111 GO:0005524 GO:0008568 -

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0008568

microtubule-severing ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate. Catalysis of the severing of a microtubule at a specific spot along its length, coupled to the hydrolysis of ATP.
GO Category: 
MF

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