843 Rab1_Ypt1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
843 chr_22 Rab1_Ypt1 67569 69291 - Rab1_Ypt1

Synonyms

NCBI ID Ensembl Genomes exon ID
7449470 Thaps843.1, Thaps843.4, Thaps843.3, Thaps843.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0184

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0013
 0.47

Most Highly Correlated Transcripts

34306

Thioredoxin_like superfamily
0.8543

6964

RING superfamily
0.8379

25025

PHear_NECAP
0.8363

37118

FeThRed_B
0.8363

723

(rfC2) rfc
0.8338

24373

hypothetical protein
0.8293

7607

Methyltransf_31
0.8278

25189

hypothetical protein
0.8248

9247

hypothetical protein
0.823

3229

hypothetical protein
0.8217

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Rab1_Ypt1 Rab GTPase family 1 includes the yeast homolog Ypt1; Rab1/Ypt1 subfamily. Rab1 is found in every... cl17170 308.489 2.17E-107 14 - 178 specific 206661
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 308.489 2.17E-107 14 - 178 superfamily 266525
PLN03108 Rab family protein; Provisional - 201.708 9.04E-65 12 - 213 multi-dom 178655

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_51727 PHATRDRAFT_51727 215736 317756 Not available Not available Not available 354794

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005525 GO:0007264 GO:0006886 GO:0000160 GO:0003677 GO:0006355 GO:0015031 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0007264

small GTPase mediated signal transduction

Details: 
Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
GO Category: 
BP

GO:0006886

intracellular protein transport

Details: 
The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO Category: 
BP

GO:0000160

phosphorelay signal transduction system

Details: 
A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
GO Category: 
BP

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0015031

protein transport

Details: 
The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

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