9607 (Tp_HSF_3.7e) HSF_DNA-bind
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
9607 chr_13 (Tp_HSF_3.7e) HSF_DNA-bind 895023 896556 + HSF_DNA-bind

Synonyms

NCBI ID Ensembl Genomes exon ID
7447884 Thaps9607.5, Thaps9607.4, Thaps9607.1, Thaps9607.3, Thaps9607.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0307

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0019
 0.40

Most Highly Correlated Transcripts

20778

(Tp_TAZ6) zf-TAZ
0.8361

11713

hypothetical protein
0.8267

8143

hypothetical protein
0.8149

4047

hypothetical protein
0.8138

263610

COG3899
0.8132

23031

hypothetical protein
0.803

8762

SNF2_N
0.7926

24098

hypothetical protein
0.7924

263599

COG3899
0.7899

21117

hypothetical protein
0.7887

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HSF_DNA-bind HSF-type DNA-binding; HSF-type DNA-binding. cl12113 89.0962 5.32E-22 93 - 180 specific 249865
HSF_DNA-bind superfamily HSF-type DNA-binding; HSF-type DNA-binding. - 89.0962 5.32E-22 93 - 180 superfamily 264552

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003700 GO:0005634 GO:0006355 GO:0003677 -

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

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