9992 H15
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
9992 chr_14 H15 940718 941830 - H15

Synonyms

NCBI ID Ensembl Genomes exon ID
7441842 Thaps9992.3, Thaps9992.1, Thaps9992.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0082

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0207
 0.30

Most Highly Correlated Transcripts

bd1983

(bd1983) RecA-like_NTPases superfamily
0.9646

bd439

(bd439) POLBc_alpha
0.9612

bd950

(bd950) NA
0.9565

37432

PTZ00018
0.9343

9993

H15
0.9332

3183

PTZ00018
0.9307

bd843

(bd843) NA
0.9295

33270

PLN00157
0.9217

bd1214

(bd1214) KISc_C_terminal
0.9194

37309

PLN00158
0.9187

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
H15 linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome,... cl00073 62.6387 1.91E-13 44 - 119 specific 238028
H15 superfamily linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome,... - 62.6387 1.91E-13 44 - 119 superfamily 260173

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000786 GO:0003677 GO:0005634 GO:0006334 GO:0007001 -

GO:0000786

nucleosome

Details: 
A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
GO Category: 
CC

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006334

nucleosome assembly

Details: 
The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
GO Category: 
BP

GO:0007001

NA

Details: 
NA
GO Category: 
NA

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