bd1861 (bd1861) PTZ00141
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
bd1861 bd_20x5 (bd1861) PTZ00141 43905 46932 - PTZ00141

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0411

Most Highly Correlated Transcripts

25228

hypothetical protein
0.8637

38180

RED_N superfamily
0.8612

11576

MPP_Vps29
0.8594

23816

hypothetical protein
0.8521

23691

hypothetical protein
0.8507

24305

Ubox
0.8455

337

TEF1
0.8417

7103

GRASP55_65
0.8378

264534

Aa_trans superfamily
0.8355

22889

HMGB-UBF_HMG-box
0.8334

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
EF1_alpha Elongation Factor 1-alpha (EF1-alpha) protein family; EF1 is responsible for the GTP-dependent... cl17170 419.589 6.08E-146 9 - 227 specific 206670
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 419.589 6.08E-146 9 - 227 superfamily 266525
EF1_alpha_III Domain III of EF-1. Eukaryotic elongation factor 1 (EF-1) is responsible for the GTP-dependent... cl02786 185.475 8.88E-57 323 - 426 specific 239676
Translation_factor_III superfamily Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G. Elongation factors (EF) EF-Tu and EF-G... - 185.475 8.88E-57 323 - 426 superfamily 261448
EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is... cl02787 168.885 1.12E-50 230 - 320 specific 239664
Translation_Factor_II_like superfamily Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor... - 168.885 1.12E-50 230 - 320 superfamily 261449
PTZ00141 elongation factor 1- alpha; Provisional - 809.744 0 1 - 443 multi-dom 185474

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_28737 PHATRDRAFT_28737 Not available Not available Not available Not available AT5G60390.2 Not available

KEGG

KEGG description KEGG Pathway
RNA transport map03013

GO Terms

Not available -

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