PHATRDRAFT_15125 gdp-4-keto-6-deoxy-d-mannose epimerase-reductase (PLN02725)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_15125	chr_18	gdp-4-keto-6-deoxy-d-mannose epimerase-reductase (PLN02725)	122827	123762	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0124

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0224	0.21	0.31 29

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
GDP_FS_SDR_e		GDP-fucose synthetase, extended (e) SDRs; GDP-fucose synthetase (aka 3, 5-epimerase-4-reductase)...	cl09931	447.798	1.44E-158	1 - 302	specific	187550
NADB_Rossmann superfamily		Rossmann-fold NAD(P)(+)-binding proteins; A large family of proteins that share a Rossmann-fold NAD...	-	447.798	1.44E-158	1 - 302	superfamily	263925
PLN02725		GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase	-	540.826	0	1 - 311	multi-dom	178326

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
26470		Not available	273482	241200	206625	Not available	AT1G17890.1	511177

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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