21957 PAP_fibrillin superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
21957	chr_3	PAP_fibrillin superfamily	1928602	1929616	-	PAP_fibrillin superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7452064	Thaps21957.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0033

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0250	0.30	0.0011 2200

Most Highly Correlated Transcripts

4108 hypothetical protein 0.9707	4465 hypothetical protein 0.94	36669 TPT 0.9288	261400 NA 0.9202	26991 GRX_GRXh_1_2_like 0.9142	268908 Trans_IPPS_HH 0.9109
2597 hypothetical protein 0.9097	11214 SOUL 0.9085	268592 VDE superfamily 0.9072	22673 NA 0.9028

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PAP_fibrillin superfamily		PAP_fibrillin; This family identifies a conserved region found in a number of plastid lipid-...	-	70.993	2.64E-15	47 - 257	superfamily	252780

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_48066	PHATRDRAFT_48066	226843	317969	107874	Cre11.g478850.t1.2	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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