Thaps_bicluster_0250 Residual: 0.30
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0250 0.30 Thalassiosira pseudonana
Displaying 1 - 18 of 18
10882 hypothetical protein

10882 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10882
11474 hypothetical protein

11474 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11474
1155 hypothetical protein

1155 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

1155
14655 (met) Rubis-subs-bind

14655 - (met) Rubis-subs-bind

GO Terms:

GO:0030785

CD Domains:

Go To Gene Page:

14655
1634 hypothetical protein

1634 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

1634
17443 IMPase

17443 - IMPase

GO Terms:

GO:0004437, GO:0008934

CD Domains:

Go To Gene Page:

17443
20584 hypothetical protein

20584 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

20584
21957 PAP_fibrillin superfamily

21957 - PAP_fibrillin superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

21957
23953 hypothetical protein

23953 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23953
262553 Voltage_gated_ClC

262553 - Voltage_gated_ClC

GO Terms:

GO:0005247, GO:0006821, GO:0016020

CD Domains:

Go To Gene Page:

262553
36858 2A0114

36858 - 2A0114

GO Terms:

GO:0005215, GO:0006810, GO:0016021

CD Domains:

Go To Gene Page:

36858
4465 hypothetical protein

4465 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4465
4871 hypothetical protein

4871 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4871
5099 DUF3119 superfamily

5099 - DUF3119 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

5099
6015 CIA30 superfamily

6015 - CIA30 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

6015
6564 TspO_MBR superfamily

6564 - TspO_MBR superfamily

GO Terms:

GO:0016021

CD Domains:

Go To Gene Page:

6564
7487 MFS_1

7487 - MFS_1

GO Terms:

GO:0015520, GO:0015904, GO:0016021

CD Domains:

Go To Gene Page:

7487
8410 hypothetical protein

8410 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8410
GO ID Go Term p-value q-value Cluster
GO:0006750 glutathione biosynthetic process 0.000826959 1 Thaps_bicluster_0250
GO:0006821 chloride transport 0.00165341 1 Thaps_bicluster_0250
GO:0015904 tetracycline transport 0.00412967 1 Thaps_bicluster_0250
GO:0006810 transport 0.143738 1 Thaps_bicluster_0250
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