23187 SDA1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
23187 chr_6 SDA1 1301773 1305553 + SDA1

Synonyms

NCBI ID Ensembl Genomes exon ID
7442412 Thaps23187.1, Thaps23187.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0220

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0199
 0.24

Most Highly Correlated Transcripts

268689

RRM6_RBM19_RRM5_MRD1
0.9302

22212

COG5638
0.9264

268559

COG1084
0.9219

bd1877

(bd1877) NA
0.9207

261462

hypothetical protein
0.9103

22203

(Tp_CCHH28) zf-C2H2_2
0.9085

24590

DUF663
0.9052

32374

TPR
0.9015

268596

CBF
0.9001

21082

Cupin_8 superfamily
0.8983

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SDA1 SDA1; This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae... - 136.331 3.91E-35 503 - 831 multi-dom 253133

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_45828 PHATRDRAFT_45828 202960 193034 242784 Cre06.g277050.t1.1 AT4G31520.1 564068

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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