24112 (Tp_HSF_1.1e) HSF_DNA-bind
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
24112 chr_10 (Tp_HSF_1.1e) HSF_DNA-bind 153790 156375 + HSF_DNA-bind

Synonyms

NCBI ID Ensembl Genomes exon ID
7451040 Thaps24112.2, Thaps24112.3, Thaps24112.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0311

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0291
 0.48

Most Highly Correlated Transcripts

bd1877

(bd1877) NA
0.8956

bd1802

(bd1802) NA
0.8932

bd739

(bd739) NA
0.8907

bd938

(bd938) PBP2_NikA_DppA_OppA_like superfamily
0.8731

bd895

(bd895) NA
0.8636

bd616

(bd616) NA
0.8551

bd1891

(bd1891) COG3899
0.8495

9345

hypothetical protein
0.8466

7335

hypothetical protein
0.8229

11063

hypothetical protein
0.8223

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HSF_DNA-bind HSF-type DNA-binding; HSF-type DNA-binding. cl12113 116.831 8.03E-32 26 - 127 specific 249865
HSF_DNA-bind superfamily HSF-type DNA-binding; HSF-type DNA-binding. - 116.831 8.03E-32 26 - 127 superfamily 264552

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_45112 PHATRDRAFT_45112 197204 610 Not available Not available AT3G63350.1 348169

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003700 GO:0005634 GO:0006355 GO:0003677 -

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

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