261690 ABCG_EPDR
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
261690 chr_3 ABCG_EPDR 393272 395411 + ABCG_EPDR

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0030

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0287
 0.36

Most Highly Correlated Transcripts

bd392

(bd392) DEXDc
0.9312

268592

VDE superfamily
0.9101

bd446

(bd446) HrpA
0.9062

bd1192

(bd1192) Acyl_ACP_Desat
0.9031

bd624

(bd624) Glyco_transf_34 superfamily
0.8985

262510

Alg6_Alg8 superfamily
0.8984

261400

NA
0.8895

31829

CBS_like
0.8812

bd1949

(bd1949) NA
0.8802

bd668

(bd668) NA
0.8793

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABCG_EPDR Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily;... cl17201 221.656 4.31E-68 6 - 230 specific 213180
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 221.656 4.31E-68 6 - 230 superfamily 266551
ABC2_membrane ABC-2 type transporter; ABC-2 type transporter. cl17235 119.67 7.50E-31 330 - 538 specific 250332
ABC2_membrane superfamily ABC-2 type transporter; ABC-2 type transporter. - 119.67 7.50E-31 330 - 538 superfamily 266576
CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] - 175.188 1.11E-49 6 - 292 multi-dom 224054

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_49726 PHATRDRAFT_49726 189268 320462 Not available Cre12.g547300.t1.1 AT2G01320.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0016887 GO:0000166 GO:0017111 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0016887

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

Add comment

Log in to post comments