262125 (NIR_2) PLN02431
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262125 chr_4 (NIR_2) PLN02431 795791 797862 + PLN02431

Synonyms

NCBI ID Ensembl Genomes exon ID
7453154 Thaps262125.1, Thaps262125.3, Thaps262125.2, Thaps262125.4

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0360

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0038
 0.59

Most Highly Correlated Transcripts

25478

hypothetical protein
0.89

bd1806

(bd1806) AAT_I superfamily
0.8868

27414

(NRT1) 2A0108
0.8247

bd524

(bd524) NA
0.8038

bd1807

(bd1807) RRS1 superfamily
0.7926

3393

Form_Nir_trans
0.7863

bd1667

(bd1667) Mpp10
0.7852

1440

hypothetical protein
0.7752

25299

PLN02252
0.7726

17687

AAA
0.7695

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain; Sulphite and nitrite reductases are vital in the... cl19102 128.139 1.75E-34 210 - 371 specific 250346
HCP_like superfamily The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (... - 66.8919 5.62E-13 483 - 617 superfamily 267455
NIR_SIR_ferr superfamily Nitrite/Sulfite reductase ferredoxin-like half domain; Sulfite and Nitrite reductases are key to... - 68.6916 2.42E-14 401 - 464 superfamily 251971
NIR_SIR_ferr superfamily Nitrite/Sulfite reductase ferredoxin-like half domain; Sulfite and Nitrite reductases are key to... - 68.6916 2.42E-14 401 - 464 superfamily 251971
NIR_SIR_ferr superfamily Nitrite/Sulfite reductase ferredoxin-like half domain; Sulfite and Nitrite reductases are key to... - 68.6916 2.42E-14 401 - 464 superfamily 251971
NIR_SIR_ferr superfamily Nitrite/Sulfite reductase ferredoxin-like half domain; Sulfite and Nitrite reductases are key to... - 68.6916 2.42E-14 401 - 464 superfamily 251971
HCP_like superfamily The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (... - 66.8919 5.62E-13 483 - 617 superfamily 267455
PLN02431 ferredoxin--nitrite reductase - 780.5 0 1 - 606 multi-dom 178050

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_12902 PHATRDRAFT_12902 185143 204738 428968 Cre09.g410750.t1.2 AT2G15620.1 Not available

KEGG

KEGG description KEGG Pathway
Nitrogen metabolism map00910

GO Terms

GO:0006118 GO:0016664 GO:0042128 GO:0048307 -

GO:0006118

NA

Details: 
NA
GO Category: 
NA

GO:0016664

oxidoreductase activity, acting on other nitrogenous compounds as donors, iron-sulfur protein as acceptor

Details: 
Catalysis of an oxidation-reduction (redox) reaction in which a nitrogenous group, excluding NH and NH2 groups, acts as a hydrogen or electron donor and reduces an iron-sulfur protein.
GO Category: 
MF

GO:0042128

nitrate assimilation

Details: 
The nitrogen metabolic process that encompasses the uptake of nitrate from the environment and reduction to ammonia, and results in the incorporation of nitrogen derived from nitrate into cellular substances.
GO Category: 
BP

GO:0048307

ferredoxin-nitrite reductase activity

Details: 
Catalysis of the reaction: NH3 + 2 H2O + 6 oxidized ferredoxin = nitrite + 6 reduced ferredoxin + 7 H+.
GO Category: 
MF

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