32223 Rab18
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
32223 chr_2 Rab18 2258380 2259280 - Rab18

Synonyms

NCBI ID Ensembl Genomes exon ID
7452904 Thaps32223.1, Thaps32223.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0086

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0222
 0.32

Most Highly Correlated Transcripts

262513

(RPA2_2) RFA2
0.8975

7942

hypothetical protein
0.877

9238

hypothetical protein
0.8753

37328

PriL_PriS_Eukaryotic
0.8684

7091

hypothetical protein
0.8673

28317

trimeric_dUTPase
0.866

bd439

(bd439) POLBc_alpha
0.8643

261635

(pcna) PLN00057
0.8642

7206

hypothetical protein
0.8631

20587

hypothetical protein
0.8612

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Rab18 Rab GTPase family 18 (Rab18); Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport... cl17170 261.862 8.64E-89 22 - 191 specific 206656
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 261.862 8.64E-89 22 - 191 superfamily 266525
PLN03108 Rab family protein; Provisional - 182.063 7.62E-57 18 - 233 multi-dom 178655

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_51810 PHATRDRAFT_51810 257464 320455 432905 Cre11.g482900.t1.1 AT1G43890.3 314944

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005525 GO:0007264 GO:0006886 GO:0015031 GO:0003924 GO:0003925 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0007264

small GTPase mediated signal transduction

Details: 
Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
GO Category: 
BP

GO:0006886

intracellular protein transport

Details: 
The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO Category: 
BP

GO:0015031

protein transport

Details: 
The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0003924

GTPase activity

Details: 
Catalysis of the reaction: GTP + H2O = GDP + phosphate.
GO Category: 
MF

GO:0003925

NA

Details: 
NA
GO Category: 
NA

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