34006 SunThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
34006	chr_5	Sun	289527	291959	+	Sun

Synonyms

NCBI ID	Ensembl Genomes exon ID
7447285	Thaps34006.2, Thaps34006.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0220

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0199	0.24	14 45

Most Highly Correlated Transcripts

32807 DEADc 0.9692	25484 hypothetical protein 0.9477	40223 PLN02347 0.9465	24016 Ebp2 superfamily 0.9452	27873 PLN02274 0.9436	bd96 (bd96) eIF-3_zeta 0.943
40341 WD40 superfamily 0.9402	30833 Bystin 0.9397	268145 PLN00040 0.9386	23900 hypothetical protein 0.9386

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Sun		tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]	-	324.728	2.04E-103	337 - 668	multi-dom	223222

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_25394	PHATRDRAFT_25394	226243	318223	197644	Cre06.g273413.t1.1	AT4G26600.1	476935

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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