268145 PLN00040
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268145 chr_1 PLN00040 2920184 2921726 - PLN00040

Synonyms

NCBI ID Ensembl Genomes exon ID
7452589 Thaps268145.1, Thaps268145.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0223

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0230
 0.24

Most Highly Correlated Transcripts

268596

CBF
0.9558

29705

18S_RNA_Rcl1p
0.9519

268598

COG1094
0.9502

268744

SUA5
0.9464

27873

PLN02274
0.9414

6835

DUF947
0.9397

32807

DEADc
0.9392

34006

Sun
0.9386

262041

MIF4G
0.9353

29018

NMD3
0.9336

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Ribosomal_L28e Ribosomal L28e protein family; Ribosomal L28e protein family. cl03350 114.969 3.02E-31 7 - 123 specific 250857
Ribosomal_L28e superfamily Ribosomal L28e protein family; Ribosomal L28e protein family. - 114.969 3.02E-31 7 - 123 superfamily 261697
Mak16 superfamily Mak16 protein C-terminal region; The precise function of this eukaryotic protein family is unknown... - 75.3096 4.69E-17 150 - 204 superfamily 252848
Mak16 superfamily Mak16 protein C-terminal region; The precise function of this eukaryotic protein family is unknown... - 75.3096 4.69E-17 150 - 204 superfamily 252848
PLN00040 Protein MAK16 homolog; Provisional - 307.856 9.27E-104 1 - 205 multi-dom 215038

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_30960 PHATRDRAFT_30960 233025 65430 103754 Cre02.g145231.t1.2 AT1G23280.1 562761

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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