39003 NIP7
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
39003 chr_1 NIP7 644289 645218 - NIP7

Synonyms

NCBI ID Ensembl Genomes exon ID
7442910 Thaps39003.3, Thaps39003.2, Thaps39003.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0224

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0276
 0.21

Most Highly Correlated Transcripts

21725

Brix superfamily
0.9495

36406

Ribosomal_L7_archeal_euk
0.9353

40509

(RL30) Ribosomal_L24e_L24
0.9331

bd1667

(bd1667) Mpp10
0.9305

20658

Nop53
0.9264

6835

DUF947
0.9247

31465

Brix
0.9242

269776

Ribosomal_L1
0.9222

28755

NSA2
0.9212

32807

DEADc
0.9185

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NIP7 Protein involved in ribosomal biogenesis, contains PUA domain [Translation, ribosomal structure and... cl00607 161.814 3.45E-50 1 - 174 specific 224293
PUA superfamily PUA domain; The PUA domain named after Pseudouridine synthase and Archaeosine transglycosylase, was... - 161.814 3.45E-50 1 - 174 superfamily 260527

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_13281 PHATR_13281 256734 291745 431202 Cre12.g528900.t1.1 AT4G15770.1 352017

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

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