Phatr_hclust_0201 Hierarchical Clustering
Phaeodactylum tricornutum

Cluster Plot Conditions Plot Dendrogram
GO ID Go Term p-value q-value Cluster
GO:0016071 mRNA metabolism 0.0000401 0.126828 Phatr_hclust_0201
GO:0008283 cell proliferation 0.00542673 1 Phatr_hclust_0201
GO:0042254 ribosome biogenesis and assembly 0.0162 1 Phatr_hclust_0201
GO:0006364 rRNA processing 0.0215467 1 Phatr_hclust_0201
GO:0007186 G-protein coupled receptor protein signaling pathway 0.0347981 1 Phatr_hclust_0201
GO:0006807 nitrogen compound metabolism 0.0374288 1 Phatr_hclust_0201
GO:0019538 protein metabolism 0.0936787 1 Phatr_hclust_0201
GO:0006396 RNA processing 0.142204 1 Phatr_hclust_0201
GO:0006457 protein folding 0.275986 1 Phatr_hclust_0201
GO:0006412 protein biosynthesis 0.360385 1 Phatr_hclust_0201
PHATRDRAFT_42570 : ribosomal rna processing 12 homolog (NUC173 superfamily)
PHATRDRAFT_46994 : u3 snornp protein (Mpp10)
PHATRDRAFT_44555 : zz domain protein (Kri1_C)
PHATRDRAFT_19647 : brix domain containing 1 (Brix superfamily)
PHATRDRAFT_25133 : nog2_klula nucleolar gtp-binding protein 2 (NGP_1)
PHATRDRAFT_8777 : at3g22660 mwi23_3 (Ebp2 superfamily)
PHATRDRAFT_12144 : chromosome 1 open reading frame 33 (Ribosomal_P0_like)
PHATRDRAFT_31725 : (PIN_Nob1)
PHATRDRAFT_49450 : rrna processing protein rrp7 (RRP7_like superfamily)
PHATRDRAFT_44055 : 23s rrna (uracil-5-)-methyltransferase (meth_trns_rumB)
PHATRDRAFT_47058 : (Pumilio superfamily)
PHATRDRAFT_14068 : chromosome 9 open reading frame 114 (Methyltrn_RNA_3)
PHATRDRAFT_41002 : thif family (YgdL_like)
PHATRDRAFT_14450 : ribosomal protein l7 (Ribosomal_L7_archeal_euk)
PHATRDRAFT_45844 : at1g04130 f20d22_10 (TPR)
PHATRDRAFT_44047 : wd repeats and sof domain containing 1 (COG2319)
PHATRDRAFT_45888 : nucleolar complex associated 4 homolog (CBF)
PHATRDRAFT_12140 : chaperonedomain protein (DnaJ)
PHATRDRAFT_49433 : (COG5638)
PHATRDRAFT_32036 : noc2l_arath nucleolar complex protein 2 homolog (protein noc2 homolog) (Noc2 superfamily)
PHATRDRAFT_45727 : mak5_emeni atp-dependent rna helicase mak5 (SrmB)
PHATRDRAFT_23865 : atp-dependent rna helicase-like protein (HA2)
PHATRDRAFT_54038 : af155362_1charged amino acid rich leucine zipper factor-1 (Sas10)
PHATRDRAFT_12322 : exosome component 6 (RNase_PH superfamily)
PHATRDRAFT_48320 : phytanoyl-dioxygenase family protein (PhyH superfamily)
PHATRDRAFT_50630 : ccaat enhancer binding protein zeta isoform 2 (COG5593)
PHATRDRAFT_48486 : histone tail methylase containing set domain (SET)
PHATRDRAFT_38930 : carbon-nitrogen hydrolase (CPA)
PHATRDRAFT_22658 : rna cyclase homolog (18S_RNA_Rcl1p)
PHATRDRAFT_46259 : rna-dependent helicase (DEADc)
PHATRDRAFT_13820 : bystin family protein (Bystin)
PHATRDRAFT_32758 : dead box rna helicase (PRK04837)
PHATRDRAFT_16814 : bop1-prov protein (BOP1NT)
PHATRDRAFT_37596 : ltv1 homolog (LTV)
PHATRDRAFT_17974 : rnu3ip2 protein (WD40 superfamily)
PHATRDRAFT_9989 : dead (asp-glu-ala-asp) box polypeptide 55 (SrmB)
PHATRDRAFT_40070 : nucleolar protein with mif4g domain 1 (MIF4G)
PHATRDRAFT_10782 : rna helicase (DEADc)
PHATRDRAFT_46846 : glioma tumor suppressor candidate region gene 2 isoform 4 (Nop53)
PHATRDRAFT_47014 : rna binding s1 domain protein (S1_like)
PHATRDRAFT_55141 : exosome complex exonuclease rrp42 (ribosomal rna processing protein 42 (RNase_PH superfamily)
PHATRDRAFT_21538 : utp11-u3 small nucleolar ribonucleoprotein (Utp11)
PHATRDRAFT_20740 : rna binding motif protein 19 (RRM3_RBM19_RRM2_MRD1)
PHATRDRAFT_14145 : pescadillo n-terminus family protein (NOP7)
PHATRDRAFT_16633 : rna-binding protein (RRM_1)
PHATRDRAFT_45441 : mis3_schpo ribosomal rna assembly protein mis3 (COG1094)
PHATRDRAFT_22868 : notchless protein homolog (WD40)
PHATRDRAFT_42302 : methyltransferase wbscr22 (williams-beuren syndrome chromosome region 22 protein homolog) (WBS_methylT)
PHATRDRAFT_25394 : loc100036868 protein (nop2p)
PHATRDRAFT_27905 : peter pan homolog (Brix)
PHATRDRAFT_51007 : u3 small nucleolar ribonucleoprotein protein (Brix)
Condition Condition Difference FDR
Re-illuminated_6h Re-illuminated_6h -1.126 0.000505051
Copper_SH Copper_SH 0.280 0.000515464
Green_vs_Red_24h Green_vs_Red_24h 0.218 0.003125
Silver_SH Silver_SH -0.321 0.000555556
Cadmium_1.2mg Cadmium_1.2mg -0.230 0.00104167
BlueLight_24h BlueLight_24h 0.560 0.00128205
GreenLight_0.5h GreenLight_0.5h 1.090 0.000458716
RedLight_6h RedLight_6h -1.564 0.000694444
light_16hr_dark_7.5hr light_16hr_dark_7.5hr 0.000 1
GreenLight_24h GreenLight_24h 0.373 0.000961538
light_6hr light_6hr -1.676 0.000561798
dark_8hr_light_3hr dark_8hr_light_3hr -1.159 0.00060241
Blue_vs_Green_6h Blue_vs_Green_6h -0.094 0.114904
Ammonia_SH Ammonia_SH 4.286 0.000344828
Simazine_SH Simazine_SH -0.254 0.00143885
Oil_SH Oil_SH 0.266 0.000666667
Salinity_15ppt_SH Salinity_15ppt_SH -0.103 0.180251
Cadmium_SH Cadmium_SH -0.090 0.241176
Blue_vs_Red_24h Blue_vs_Red_24h 0.406 0.00166667
highlight_0to6h highlight_0to6h 0.622 0.000806452
BlueLight_0.5h BlueLight_0.5h 1.223 0.000462963
Dispersant_SH Dispersant_SH -0.021 0.79842
light_16hr_dark_4hr light_16hr_dark_4hr -0.196 0.00903615
light_15.5hr light_15.5hr -0.032 0.851645
light_10.5hr light_10.5hr -1.610 0.000561798
Dispersed_oil_SH Dispersed_oil_SH -0.152 0.0361257
Si_free Si_free 0.171 0.0948276
Re-illuminated_0.5h Re-illuminated_0.5h 1.317 0.000396825
Mixture_SH Mixture_SH 4.114 0.000357143
Blue_vs_Red_6h Blue_vs_Red_6h 0.285 0.0113636
light_16hr_dark_30min light_16hr_dark_30min -0.002 0.9958
BlueLight_6h BlueLight_6h -1.279 0.000581395
highlight_12to48h highlight_12to48h 1.200 0.000555556
RedLight_24h RedLight_24h 0.155 0.135789
Dark_treated Dark_treated -1.085 0.000446429
GreenLight_6h GreenLight_6h -1.186 0.000609756
Cadmium_0.12mg Cadmium_0.12mg -0.161 0.00185185
Blue_vs_Green_24h Blue_vs_Green_24h 0.187 0.00135135
RedLight_0.5h RedLight_0.5h 1.195 0.000555556
Green_vs_Red_6h Green_vs_Red_6h 0.379 0.0015625
Re-illuminated_24h Re-illuminated_24h 0.569 0.000657895
MEME Output