Phatr_bicluster_0172 Residual: 0.15
Phaeodactylum tricornutum

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Phatr_bicluster_0172 0.15 Phaeodactylum tricornutum
Displaying 1 - 16 of 16
PHATRDRAFT_13028 sprt-like metalloprotease (SprT-like)

PHATRDRAFT_13028 - sprt-like metalloprotease (SprT-like)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_13028
PHATRDRAFT_2845 protein serine threonine kinase (STKc_MAPKKK)

PHATRDRAFT_2845 - protein serine threonine kinase (STKc_MAPKKK)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_2845
PHATRDRAFT_34026 mkiaa0609 protein (Glyco_transf_49 superfamily)

PHATRDRAFT_34026 - mkiaa0609 protein (Glyco_transf_49 superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_34026
PHATRDRAFT_37774

PHATRDRAFT_37774 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_37774
PHATRDRAFT_38651 viral a-type inclusion (SMC_prok_B)

PHATRDRAFT_38651 - viral a-type inclusion (SMC_prok_B)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_38651
PHATRDRAFT_44271 (SET)

PHATRDRAFT_44271 - (SET)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_44271
PHATRDRAFT_45552

PHATRDRAFT_45552 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_45552
PHATRDRAFT_46060

PHATRDRAFT_46060 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_46060
PHATRDRAFT_46380

PHATRDRAFT_46380 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_46380
PHATRDRAFT_46659

PHATRDRAFT_46659 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_46659
PHATRDRAFT_47053

PHATRDRAFT_47053 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_47053
PHATRDRAFT_47205 (SANT)

PHATRDRAFT_47205 - (SANT)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_47205
PHATRDRAFT_47533

PHATRDRAFT_47533 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_47533
PHATRDRAFT_47557

PHATRDRAFT_47557 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_47557
PHATRDRAFT_4761 xpmc2 prevents mitotic catastrophe 2 homolog (REX4_like)

PHATRDRAFT_4761 - xpmc2 prevents mitotic catastrophe 2 homolog (REX4_like)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_4761
PHATRDRAFT_9158 kinesin (kar3 subfamily) (Motor_domain superfamily)

PHATRDRAFT_9158 - kinesin (kar3 subfamily) (Motor_domain superfamily)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_9158
GO ID Go Term p-value q-value Cluster
GO:0007018 microtubule-based movement 0.0147654 1 Phatr_bicluster_0172
GO:0006468 protein amino acid phosphorylation 0.0831648 1 Phatr_bicluster_0172
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