Phatr_bicluster_0174 Residual: 0.15
Phaeodactylum tricornutum

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Phatr_bicluster_0174 0.15 Phaeodactylum tricornutum
Displaying 1 - 20 of 20
PHATRDRAFT_15440 kinesin-related protein klpa-like protein (KISc_C_terminal)

PHATRDRAFT_15440 - kinesin-related protein klpa-like protein (KISc_C_terminal)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_15440
PHATRDRAFT_22319 importin alpha-2 (SRP1)

PHATRDRAFT_22319 - importin alpha-2 (SRP1)

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_22319
PHATRDRAFT_37861

PHATRDRAFT_37861 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_37861
PHATRDRAFT_39317

PHATRDRAFT_39317 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_39317
PHATRDRAFT_41098

PHATRDRAFT_41098 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_41098
PHATRDRAFT_43937

PHATRDRAFT_43937 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_43937
PHATRDRAFT_47544 proteophosphoglycan ppg4

PHATRDRAFT_47544 - proteophosphoglycan ppg4

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_47544
PHATRDRAFT_47561

PHATRDRAFT_47561 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_47561
PHATRDRAFT_47569

PHATRDRAFT_47569 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_47569
PHATRDRAFT_47571 proteophosphoglycan ppg4

PHATRDRAFT_47571 - proteophosphoglycan ppg4

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_47571
PHATRDRAFT_47572

PHATRDRAFT_47572 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_47572
PHATRDRAFT_47573

PHATRDRAFT_47573 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_47573
PHATRDRAFT_47720 eyespot globule-associated protein 1

PHATRDRAFT_47720 - eyespot globule-associated protein 1

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_47720
PHATRDRAFT_48730

PHATRDRAFT_48730 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_48730
PHATRDRAFT_49141

PHATRDRAFT_49141 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_49141
PHATRDRAFT_49571 alpha 3 frustulin

PHATRDRAFT_49571 - alpha 3 frustulin

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_49571
PHATRDRAFT_49815

PHATRDRAFT_49815 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_49815
PHATRDRAFT_49933 elicitin protein ram6

PHATRDRAFT_49933 - elicitin protein ram6

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_49933
PHATRDRAFT_50129

PHATRDRAFT_50129 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_50129
PHATRDRAFT_50494

PHATRDRAFT_50494 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

PHATRDRAFT_50494
GO ID Go Term p-value q-value Cluster
GO:0007018 microtubule-based movement 0.00740924 1 Phatr_bicluster_0174
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