Thaps_bicluster_0198 Residual: 0.40
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0198 0.40 Thalassiosira pseudonana
Displaying 1 - 33 of 33
10671 hypothetical protein

10671 - hypothetical protein

GO Terms:

GO:0004402

CD Domains:

Go To Gene Page:

10671
15638 SET

15638 - SET

GO Terms:

GO:0018024

CD Domains:

Go To Gene Page:

15638
16210 hypothetical protein

16210 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

16210
16265 S_TKc

16265 - S_TKc

GO Terms:

GO:0004672, GO:0005524, GO:0006468, GO:0004713, GO:0004674

CD Domains:

Go To Gene Page:

16265
1913 AAA

1913 - AAA

GO Terms:

GO:0000166, GO:0017111, GO:0005524

CD Domains:

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1913
20771 hypothetical protein

20771 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

20771
20777 (Tp_TAZ1) regulator [Rayko]

20777 - (Tp_TAZ1) regulator [Rayko]

GO Terms:

GO:0003712, GO:0005634, GO:0006355, GO:0004339

CD Domains:

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20777
21967 CCT

21967 - CCT

GO Terms:

GO:0004308

CD Domains:

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21967
22122 JmjC

22122 - JmjC

GO Terms:

NA

CD Domains:

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22122
22324 hypothetical protein

22324 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22324
22379 hypothetical protein

22379 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22379
22531 hypothetical protein

22531 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22531
22699 hypothetical protein

22699 - hypothetical protein

GO Terms:

GO:0004308

CD Domains:

Go To Gene Page:

22699
22709 hypothetical protein

22709 - hypothetical protein

GO Terms:

GO:0003899, GO:0003900, GO:0003901, GO:0003902

CD Domains:

Go To Gene Page:

22709
22790 hypothetical protein

22790 - hypothetical protein

GO Terms:

GO:0004402

CD Domains:

Go To Gene Page:

22790
22889 HMGB-UBF_HMG-box

22889 - HMGB-UBF_HMG-box

GO Terms:

GO:0003677, GO:0006355

CD Domains:

Go To Gene Page:

22889
23345 hypothetical protein

23345 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23345
2375 hypothetical protein

2375 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2375
24412 hypothetical protein

24412 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24412
24507 (Tp_bZIP5_PAS) regulator [Rayko]

24507 - (Tp_bZIP5_PAS) regulator [Rayko]

GO Terms:

NA

CD Domains:

Go To Gene Page:

24507
270332 hypothetical protein

270332 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

270332
30866 hypothetical protein

30866 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

30866
3101 hypothetical protein

3101 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3101
32485 PLN02681

32485 - PLN02681

GO Terms:

GO:0005509, GO:0004657, GO:0006537, GO:0006562, GO:0004154, GO:0016647, GO:0019116

CD Domains:

Go To Gene Page:

32485
3375 (Tp_Myb2R2) regulator [Rayko]

3375 - (Tp_Myb2R2) regulator [Rayko]

GO Terms:

GO:0003677, GO:0005634

CD Domains:

Go To Gene Page:

3375
3447 hypothetical protein

3447 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3447
35740 fabG

35740 - fabG

GO Terms:

GO:0008152, GO:0016491, GO:0008667

CD Domains:

Go To Gene Page:

35740
6295 hypothetical protein

6295 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6295
6935 (Tp_HSF_1.3h) HSF_DNA-bind superfamily

6935 - (Tp_HSF_1.3h) HSF_DNA-bind superfamily

GO Terms:

GO:0003700, GO:0005634, GO:0006355, GO:0003677

CD Domains:

Go To Gene Page:

6935
7420 hypothetical protein

7420 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7420
7451 PAS_9

7451 - PAS_9

GO Terms:

NA

CD Domains:

Go To Gene Page:

7451
7466 hypothetical protein

7466 - hypothetical protein

GO Terms:

GO:0006118, GO:0016020, GO:0016491

CD Domains:

Go To Gene Page:

7466
GO ID Go Term p-value q-value Cluster
GO:0006562 proline catabolism 0.00186066 1 Thaps_bicluster_0198
GO:0006537 glutamate biosynthesis 0.00742418 1 Thaps_bicluster_0198
GO:0006355 regulation of transcription, DNA-dependent 0.0159629 1 Thaps_bicluster_0198
GO:0006468 protein amino acid phosphorylation 0.0566487 1 Thaps_bicluster_0198
GO:0006118 electron transport 0.399203 1 Thaps_bicluster_0198
GO:0008152 metabolism 0.546944 1 Thaps_bicluster_0198
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