1913 AAA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
1913 chr_1 AAA 2717362 2721336 + AAA

Synonyms

NCBI ID Ensembl Genomes exon ID
7445502 Thaps1913.2, Thaps1913.1, Thaps1913.3, Thaps1913.5, Thaps1913.4

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0037

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0198
 0.40

Most Highly Correlated Transcripts

270332

hypothetical protein
0.8422

22944

DUF747
0.8215

20683

hypothetical protein
0.8135

22790

hypothetical protein
0.8108

20777

(Tp_TAZ1) regulator [Rayko]
0.8044

269953

S49_Sppa_N_C
0.8035

3397

FixC
0.7907

24507

(Tp_bZIP5_PAS) regulator [Rayko]
0.7893

22531

hypothetical protein
0.7885

25417

hypothetical protein
0.7883

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... cl18944 66.4007 1.69E-12 874 - 1039 specific 99707
AAA superfamily The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... - 66.4007 1.69E-12 874 - 1039 superfamily 267297

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_40329 PHATRDRAFT_40329 141412 289050 96318 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000166 GO:0017111 GO:0005524 -

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

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