Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU1080(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU1080
|Gene||Common Name||Description||Module membership|
|GSU0154||GSU0154||mutT/nudix family protein (NCBI)||112, 289|
|GSU0163||GSU0163||hypothetical protein (VIMSS)||148, 206|
|GSU0204||GSU0204||radical SAM domain protein (NCBI)||118, 206|
|GSU0205||GSU0205||transcriptional regulator, TetR family (VIMSS)||112, 289|
|GSU0206||GSU0206||ZIP zinc transporter family protein (VIMSS)||189, 206|
|GSU0267||GSU0267||transcriptional regulator, GntR family (VIMSS)||118, 206|
|GSU0296||cheA||chemotaxis protein CheA, putative (NCBI)||206, 266|
|GSU0315||GSU0315||hypothetical protein (VIMSS)||86, 206|
|GSU0483||GSU0483||exsB protein (VIMSS)||112, 289|
|GSU0701||GSU0701||cytochrome c family protein (NCBI)||79, 206|
|GSU0915||GSU0915||hypothetical protein (VIMSS)||86, 206|
|GSU1005||nifR3||dihydrouridine synthase family protein (NCBI)||112, 333|
|GSU1041||GSU1041||methyl-accepting chemotaxis protein (VIMSS)||155, 206|
|GSU1080||GSU1080||hypothetical protein (VIMSS)||112, 206|
|GSU1180||ftsH-1||cell division protein FtsH (NCBI)||112, 126|
|GSU1194||GSU1194||transporter, LysE family (VIMSS)||67, 112|
|GSU1250||GSU1250||sigma-54 dependent DNA-binding response regulator (VIMSS)||46, 206|
|GSU1330||GSU1330||metal ion efflux outer membrane protein family protein, putative (NCBI)||60, 206|
|GSU1339||GSU1339||hypothetical protein (NCBI)||206, 341|
|GSU1340||GSU1340||ABC transporter, permease protein (VIMSS)||206, 341|
|GSU1410||GSU1410||conserved hypothetical protein (VIMSS)||112, 202|
|GSU1738||GSU1738||indolepyruvate ferredoxin oxidoreductase, beta subunit (VIMSS)||112, 136|
|GSU1832||GSU1832||conserved hypothetical protein (NCBI)||112, 289|
|GSU1988||GSU1988||hypothetical protein (VIMSS)||96, 206|
|GSU2083||rfbA||glucose-1-phosphate thymidylyltransferase (NCBI)||112, 333|
|GSU2122||GSU2122||TraG family protein (VIMSS)||71, 206|
|GSU2191||GSU2191||aldehyde ferredoxin oxidoreductase, tungsten-containing (VIMSS)||71, 206|
|GSU2202||GSU2202||transcriptional regulator, LysR family (VIMSS)||86, 206|
|GSU2213||GSU2213||GAF domain protein (VIMSS)||47, 112|
|GSU2364||rfbA||mannose-6-phosphate isomerase (NCBI)||112, 156|
|GSU2423||GSU2423||methyl-accepting chemotaxis protein, putative (VIMSS)||63, 206|
|GSU2497||GSU2497||lipoprotein, putative (VIMSS)||206, 341|
|GSU2498||GSU2498||lipoprotein, putative (VIMSS)||206, 341|
|GSU2565||GSU2565||sensor histidine kinase (VIMSS)||112, 156|
|GSU2567||GSU2567||sensor histidine kinase (VIMSS)||112, 144|
|GSU2698||GSU2698||transcriptional regulator, TetR family (VIMSS)||86, 206|
|GSU2722||GSU2722||NAD-reducing hydrogenase, putative (VIMSS)||112, 128|
|GSU2734||GSU2734||hypothetical protein (VIMSS)||118, 206|
|GSU2769||GSU2769||metallo-beta-lactamase family protein (VIMSS)||71, 206|
|GSU2983||GSU2983||hypothetical protein (VIMSS)||86, 206|
|GSU2990||cobD||cobalamin biosynthesis protein CobD (NCBI)||112, 289|
|GSU3080||GSU3080||hypothetical protein (VIMSS)||112, 207|
|GSU3113||GSU3113||metallo-beta-lactamase family protein (VIMSS)||112, 128|
|GSU3383||gatC||glutamyl-tRNA(Gln) amidotransferase, C subunit (NCBI)||112, 289|
|GSU3409||GSU3409||hypothetical protein (VIMSS)||97, 206|
|GSU3410||GSU3410||hypothetical protein (VIMSS)||97, 206|
|GSU3457||GSU3457||glycine cleavage system transcriptional repressor, putative (VIMSS)||112, 289|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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