Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU1295(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU1295
|Gene||Common Name||Description||Module membership|
|GSU0027||GSU0027||TolR protein (VIMSS)||57, 266|
|GSU0028||tolQ||tolQ protein (NCBI)||184, 266|
|GSU0030||GSU0030||oxygen-independent coproporphyrinogen III oxidase, putative (VIMSS)||118, 266|
|GSU0032||grpE||GrpE protein (NCBI)||184, 266|
|GSU0121||GSU0121||nickel-iron hydrogenase, b-type cytochrome subunit (VIMSS)||14, 266|
|GSU0218||GSU0218||conserved hypothetical protein (VIMSS)||21, 266|
|GSU0276||GSU0276||secretion protein, HlyD family (VIMSS)||217, 293|
|GSU0296||cheA||chemotaxis protein CheA, putative (NCBI)||206, 266|
|GSU0363||dinG||ATP-dependent helicase DinG (NCBI)||107, 266|
|GSU0369||GSU0369||FlhB domain protein, putative (NCBI)||293, 300|
|GSU0748||GSU0748||hypothetical protein (VIMSS)||217, 293|
|GSU0805||fsxA||cytoplasmic membrane protein FsxA (NCBI)||232, 266|
|GSU0875||GSU0875||hypothetical protein (VIMSS)||266, 291|
|GSU0947||GSU0947||ABC transporter, ATP-binding protein (VIMSS)||272, 293|
|GSU0993||GSU0993||conserved hypothetical protein (VIMSS)||283, 293|
|GSU1044||GSU1044||MutT/nudix family protein (VIMSS)||118, 266|
|GSU1155||GSU1155||glutaredoxin family protein (VIMSS)||51, 293|
|GSU1163||GSU1163||ABC transporter, permease protein (VIMSS)||189, 266|
|GSU1285||GSU1285||sensory box sensor histidine kinase/response regulator (VIMSS)||63, 293|
|GSU1295||GSU1295||conserved hypothetical protein (VIMSS)||266, 293|
|GSU1296||GSU1296||sensory box histidine kinase/response regulator (VIMSS)||293, 337|
|GSU1359||GSU1359||helicase, putative (NCBI)||232, 293|
|GSU1406||GSU1406||conserved domain protein (VIMSS)||163, 293|
|GSU1533||recC||exodeoxyribonuclease V, gamma subunit (NCBI)||45, 266|
|GSU1643||pleD||GGDEF/response regulator receiver domain protein (NCBI)||51, 293|
|GSU1678||GSU1678||cation-transport ATPase, E1-E2 family (VIMSS)||293, 318|
|GSU1742||GSU1742||Na/Pi-cotransporter family protein (VIMSS)||287, 293|
|GSU1818||GSU1818||phosphoglycerate mutase family protein (NCBI)||163, 293|
|GSU1819||xerD||integrase/recombinase XerD (NCBI)||163, 293|
|GSU2216||GSU2216||PBS lyase HEAT-like repeat protein (NCBI)||51, 293|
|GSU2296||GSU2296||HD domain protein (VIMSS)||141, 266|
|GSU2386||GSU2386||methylcobamide:CoM methyltransferase-related protein (NCBI)||189, 266|
|GSU2420||GSU2420||ferredoxin family protein (VIMSS)||57, 293|
|GSU2422||GSU2422||hydrogenase maturation protease (VIMSS)||283, 293|
|GSU2460||GSU2460||ribonuclease BN, putative (VIMSS)||118, 266|
|GSU2534||GSU2534||sensory box/response regulator (VIMSS)||96, 266|
|GSU2559||GSU2559||exopolyphosphatase, putative (VIMSS)||266, 291|
|GSU2599||GSU2599||ISGsu4, transposase (VIMSS)||266, 268|
|GSU2767||GSU2767||cytochrome c family protein, putative (NCBI)||107, 266|
|GSU2901||GSU2901||membrane protein, putative (VIMSS)||186, 266|
|GSU2933||GSU2933||cytochrome b/b6 complex, iron-sulfur subunit (VIMSS)||107, 266|
|GSU2934||GSU2934||cytochrome c family protein (NCBI)||45, 266|
|GSU2993||GSU2993||cobalamin biosynthesis protein CbiG, putative (NCBI)||266, 291|
|GSU3153||GSU3153||iron-sulfur cluster-binding protein (VIMSS)||252, 266|
|GSU3159||GSU3159||MutT/nudix family protein (VIMSS)||293, 318|
|GSU3181||GSU3181||Beta-ketoacyl synthase domain protein (VIMSS)||163, 293|
|GSU3325||uvrA||excinuclease ABC, A subunit (NCBI)||38, 266|
|GSU3354||GSU3354||MutT/nudix family protein (VIMSS)||226, 293|
|GSU3362||GSU3362||hypothetical protein (VIMSS)||232, 293|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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