Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU1947(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU1947
|Gene||Common Name||Description||Module membership|
|GSU0026||GSU0026||TonB-dependent receptor, putative (VIMSS)||57, 184|
|GSU0027||GSU0027||TolR protein (VIMSS)||57, 266|
|GSU0029||GSU0029||hydrolase, carbon-nitrogen family (VIMSS)||57, 184|
|GSU0033||dnaK||chaperone protein dnaK (NCBI)||57, 184|
|GSU0034||dnaJ||chaperone protein dnaJ (NCBI)||57, 184|
|GSU0181||GSU0181||lipoprotein, putative (VIMSS)||292, 325|
|GSU0182||GSU0182||lipoprotein, putative (VIMSS)||46, 292|
|GSU0331||htrA||trypsin domain/PDZ domain protein (NCBI)||91, 292|
|GSU0371||GSU0371||carbohydrate phosphorylase family protein (VIMSS)||25, 57|
|GSU0495||GSU0495||hypothetical protein (VIMSS)||57, 303|
|GSU0538||GSU0538||heat shock protein, Hsp20 family (NCBI)||292, 325|
|GSU0655||rpoH||RNA polymerase sigma-32 factor (NCBI)||57, 298|
|GSU0658||clpB||ClpB protein (NCBI)||292, 325|
|GSU0863||GSU0863||conserved hypothetical protein (VIMSS)||57, 253|
|GSU0928||GSU0928||peptidase, M16 family (NCBI)||20, 57|
|GSU1018||GSU1018||hypothetical protein (VIMSS)||292, 325|
|GSU1035||GSU1035||methyl-accepting chemotaxis protein (NCBI)||57, 189|
|GSU1072||GSU1072||transcriptional regulator, IclR family (VIMSS)||57, 135|
|GSU1083||GSU1083||conserved hypothetical protein (VIMSS)||57, 110|
|GSU1084||GSU1084||hypothetical protein (VIMSS)||57, 110|
|GSU1085||GSU1085||hypothetical protein (VIMSS)||57, 189|
|GSU1144||GSU1144||chemotaxis protein CheD, putative (VIMSS)||57, 241|
|GSU1247||GSU1247||hypothetical protein (VIMSS)||76, 292|
|GSU1370||GSU1370||oxidoreductase, aldo/keto reductase family (NCBI)||57, 321|
|GSU1394||GSU1394||spore coat protein-related protein (NCBI)||20, 57|
|GSU1395||GSU1395||hypothetical protein (VIMSS)||57, 189|
|GSU1477||lemA||LemA family protein (NCBI)||9, 292|
|GSU1478||GSU1478||conserved hypothetical protein (VIMSS)||292, 325|
|GSU1479||GSU1479||conserved hypothetical protein (VIMSS)||57, 292|
|GSU1665||GSU1665||rhomboid family protein (VIMSS)||292, 325|
|GSU1677||GSU1677||AMP-binding enzyme/acyltransferase (NCBI)||57, 66|
|GSU1720||GSU1720||6-pyruvoyl tetrahydrobiopterin synthase family protein (NCBI)||57, 125|
|GSU1765||SelGGPS||geranyltranstransferase (NCBI)||292, 321|
|GSU1877||fabK||oxidoreductase, 2-nitropropane dioxygenase family (NCBI)||71, 292|
|GSU1945||GSU1945||fibronectin type III domain protein (VIMSS)||292, 325|
|GSU1947||GSU1947||hypothetical protein (VIMSS)||57, 292|
|GSU1948||GSU1948||hypothetical protein (VIMSS)||14, 292|
|GSU2390||htpG||heat shock protein HtpG (NCBI)||292, 325|
|GSU2406||dnaJ||dnaJ domain protein (NCBI)||292, 325|
|GSU2407||GSU2407||hypothetical protein (VIMSS)||292, 325|
|GSU2408||hsp||heat shock protein, Hsp20 family (NCBI)||292, 325|
|GSU2409||GSU2409||heat shock protein, Hsp20 family (NCBI)||292, 325|
|GSU2410||GSU2410||heat shock protein, Hsp20 family (NCBI)||292, 325|
|GSU2417||GSU2417||hypothetical protein (VIMSS)||57, 135|
|GSU2420||GSU2420||ferredoxin family protein (VIMSS)||57, 293|
|GSU2459||GSU2459||hypothetical protein (VIMSS)||57, 179|
|GSU2495||GSU2495||cytochrome c family protein (NCBI)||91, 292|
|GSU2525||GSU2525||nitroreductase family protein (VIMSS)||57, 307|
|GSU2526||GSU2526||membrane protein, putative (VIMSS)||57, 125|
|GSU2750||GSU2750||conserved domain protein (VIMSS)||57, 253|
|GSU2786||b2530||cysteine desulfurase (NCBI)||57, 78|
|GSU3029||GSU3029||acyltransferase family protein (NCBI)||57, 110|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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