TargetScan_72 megaCluster: 11 Residual: 0.14

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_72 11 0.14 13 0 0.873483 0

Members

Displaying 1 - 27 of 27
100042480 NHS-like 2

Details for RP23-448C18.1 - NHS-like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100042480

Tuberculist Genomic Region

102920 centromere protein I

Details for RP23-162B19.4 - centromere protein I

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 102920

Tuberculist Genomic Region

110074 deoxyuridine triphosphatase

Details for RP23-216B20.3 - deoxyuridine triphosphatase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 110074

Tuberculist Genomic Region

110095 liver glycogen phosphorylase

Details for - - liver glycogen phosphorylase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 110095

Tuberculist Genomic Region

12235 budding uninhibited by benzimidazoles 1 homolog (S. cerevisiae)

Details for RP23-189N15.7 - budding uninhibited by benzimidazoles 1 homolog (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12235

Tuberculist Genomic Region

13605 ect2 oncogene

Details for - - ect2 oncogene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13605

Tuberculist Genomic Region

13631 eukaryotic elongation factor-2 kinase

Details for - - eukaryotic elongation factor-2 kinase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13631

Tuberculist Genomic Region

20135 ribonucleotide reductase M2

Details for - - ribonucleotide reductase M2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20135

Tuberculist Genomic Region

211651 Fanconi anemia, complementation group D2

Details for - - Fanconi anemia, complementation group D2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 211651

Tuberculist Genomic Region

218121 membrane bound O-acyltransferase domain containing 1

Details for RP23-195A2.1 - membrane bound O-acyltransferase domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 218121

Tuberculist Genomic Region

21933 tumor necrosis factor receptor superfamily, member 10b

Details for - - tumor necrosis factor receptor superfamily, member 10b

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21933

Tuberculist Genomic Region

21973 topoisomerase (DNA) II alpha

Details for RP23-333D2.5 - topoisomerase (DNA) II alpha

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21973

Tuberculist Genomic Region

234258 nei like 3 (E. coli)

Details for - - nei like 3 (E. coli)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 234258

Tuberculist Genomic Region

24014 ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)

Details for - - ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 24014

Tuberculist Genomic Region

242705 E2F transcription factor 2

Details for RP23-118A9.2 - E2F transcription factor 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 242705

Tuberculist Genomic Region

52679 E2F transcription factor 7

Details for - - E2F transcription factor 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52679

Tuberculist Genomic Region

60530 fidgetin-like 1

Details for RP23-373H2.1 - fidgetin-like 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 60530

Tuberculist Genomic Region

66140 spindle and kinetochore associated complex subunit 2

Details for RP23-352L3.5 - spindle and kinetochore associated complex subunit 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66140

Tuberculist Genomic Region

66355 guanosine monophosphate reductase

Details for - - guanosine monophosphate reductase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66355

Tuberculist Genomic Region

66442 SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)

Details for RP23-431D4.3 - SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66442

Tuberculist Genomic Region

68090 Yip1 interacting factor homolog A (S. cerevisiae)

Details for - - Yip1 interacting factor homolog A (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68090

Tuberculist Genomic Region

72042 coactosin-like 1 (Dictyostelium)

Details for - - coactosin-like 1 (Dictyostelium)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72042

Tuberculist Genomic Region

20460 Scl/Tal1 interrupting locus

Details for RP23-295C20.5 - Scl/Tal1 interrupting locus

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20460

Tuberculist Genomic Region

20877 aurora kinase B

Details for RP23-19I2.1 - aurora kinase B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20877

Tuberculist Genomic Region

68730 dihydrouridine synthase 1-like (S. cerevisiae)

Details for RP23-99M13.5 - dihydrouridine synthase 1-like (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68730

Tuberculist Genomic Region

72155 centromere protein N

Details for - - centromere protein N

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72155

Tuberculist Genomic Region

14211 structural maintenance of chromosomes 2

Details for RP23-122I3.3 - structural maintenance of chromosomes 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14211

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
TEAD1_TEA_full_dimeric_17_1 0.296296 0.00000317

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.00000000024 WAAAAAAYAAA NA 41 AMTTAGTTTTT NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.26 CCGCGA NA 1.5 GCGGCGTT NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.6 GTNGGA NA NA 0.6 TCCGTCNT NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

Add comment

Log in or register to post comments