New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 2330175	50 (0.220)	45 (0.190)	10/196	25.3	0.30	intergenic (+150/+162)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
	?	NC_014034	= 2341510	162 (0.680)					intergenic (‑61/+9)	purQ/purS	phosphoribosylformylglycinamidine synthase subunit PurQ/phosphoribosylformylglycinamidine synthase subunit PurS
Rejected: Position hash score below cutoff.

TCGGCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCG...................................................................................................  >  NC_014034/2330074‑2330175 ....................................................................................................CGGGGGCGCTGCCCCCGGACCCCCGGCGTATTTGAGCCAAGAAAAAGCAGGAGCCCTTTCGCGATGAAAGCCGCCGTCATCACCTTTCCGGGGTCGAACTG  <  NC_014034/2341510‑2341412                                                                                                                                                                                                             GGCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGG                                                                                                    <  1:2639075/101‑1 (MQ=1)    GCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGG                                                                                                   >  2:3696737/1‑101 (MQ=1)     CTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGG                                                                                                  <  1:426481/101‑1 (MQ=1)     CTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGG                                                                                                  >  1:7118/1‑101 (MQ=1)      TTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGG                                                                                                 <  1:1840779/101‑1 (MQ=1)      TTGGCCCCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGG                                                                                                 <  1:1117481/101‑1 (MQ=1)       TGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGTGGGGGg                                                                                                >  1:2702409/1‑100 (MQ=1)       TGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGC                                                                                                <  1:302174/101‑1 (MQ=1)       TGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCCGGCGGGGGg                                                                                                >  2:1865817/1‑100 (MQ=1)        GGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCt                                                                                               <  1:1978681/101‑2 (MQ=1)        GGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCG                                                                                               >  2:1953408/1‑101 (MQ=1)        GGCCTCCGCCAAGCGCGGCAACGGCGCGCAGAGCGCCGCGCGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCt                                                                                               <  2:3898903/101‑2 (MQ=0)         GCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCtc                                                                                              <  1:2753167/101‑3 (MQ=1)         GCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCGC                                                                                              >  2:494278/1‑101 (MQ=1)         GCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCGC                                                                                              >  1:932480/1‑101 (MQ=1)         GCCGCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCtc                                                                                              <  2:665626/101‑3 (MQ=1)          CCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGggtc                                                                                             >  2:1092243/1‑97 (MQ=1)          CCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCtcc                                                                                             <  2:3801561/101‑4 (MQ=1)           CTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCtccg                                                                                            <  1:753159/101‑5 (MQ=1)           CTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCtccg                                                                                            <  2:1744987/101‑5 (MQ=1)            TCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGGGCccc                                                                                           >  2:2589074/1‑98 (MQ=1)            TCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCtccgc                                                                                           <  1:3085843/101‑6 (MQ=1)               GCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCC                                                                                        <  1:3475737/101‑1 (MQ=1)                CCAAGGGCGGCAACGGGGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCC                                                                                       <  1:3519346/101‑1 (MQ=1)                CCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGgccccgcccc                                                                                       >  2:2202597/1‑91 (MQ=1)                CCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCC                                                                                       <  1:479193/101‑1 (MQ=1)                CCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCC                                                                                       >  1:3196873/1‑101 (MQ=1)                 CAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGGGCAGCCCCCc                                                                                      >  2:459824/1‑100 (MQ=0)                 CAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCG                                                                                      <  2:3801639/101‑1 (MQ=1)                 CAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCG                                                                                      <  1:3323225/101‑1 (MQ=1)                  AAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGGGCCGCCCCCcc                                                                                     >  2:1089427/1‑99 (MQ=0)                   AGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGcc                                                                                    >  1:2158956/1‑99 (MQ=1)                    GGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCAC                                                                                   <  1:102601/101‑1 (MQ=1)                    GGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCAC                                                                                   <  1:289190/101‑1 (MQ=1)                    GGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCAC                                                                                   <  1:3589829/101‑1 (MQ=1)                       CGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCC                                                                                <  1:3451276/101‑1 (MQ=1)                        GGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCC                                                                               <  1:459868/101‑1 (MQ=1)                         GCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCG                                                                              <  1:3599696/101‑1 (MQ=1)                          CAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGG                                                                             <  2:958609/101‑1 (MQ=1)                          CAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGG                                                                             <  2:2828506/101‑1 (MQ=1)                             CGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGT                                                                          <  1:620307/101‑1 (MQ=1)                               GCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTAT                                                                        <  2:3663484/101‑1 (MQ=1)                                CGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATT                                                                       <  2:3350148/101‑1 (MQ=1)                                  CGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTG                                                                     <  1:341432/101‑1 (MQ=1)                                   GCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGc                                                                    <  2:216482/101‑2 (MQ=1)                                                                                                                                                                                                           TCGGCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCG...................................................................................................  >  NC_014034/2330074‑2330175 ....................................................................................................CGGGGGCGCTGCCCCCGGACCCCCGGCGTATTTGAGCCAAGAAAAAGCAGGAGCCCTTTCGCGATGAAAGCCGCCGTCATCACCTTTCCGGGGTCGAACTG  <  NC_014034/2341510‑2341412 Base quality scores:  ATCG  < 3 ≤  ATCG  < 19 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG