New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	580888 =	193 (0.890)	58 (0.270)	17/182	20.0	0.34	intergenic (+9/‑362)	RCAP_rcc00541/RCAP_rcc00542	hypothetical protein/hypothetical protein
	?	NC_014034	2600961 =	30 (0.130)					intergenic (+23/‑118)	RCAP_rcc02424/surE	short‑chain dehydrogenase/reductase family oxidoreductase/5'‑nucleotidase SurE
Rejected: Position hash score below cutoff.

TCACCCCCCGGATATTTGCACCAAGGTGATAGGCGCCCGTTATCTTGCCTCAAATATCCCGGGGGTGAATTTCGGCGCAGCCGAAAGAGGGGGCAGCGCCCCCTGCCC....................................................................................................  <  NC_014034/580995‑580888 ...................................................................................................CCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATCAGACAGAAA  >  NC_014034/2600961‑2601060                                                                                                                                                                                                                                                                                             ccaaaggccAAGAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTT                                  >  1:726762/10‑101 (MQ=2)                                                                            ccaaaggccAAGAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTT                                  >  1:4643127/10‑101 (MQ=2)                                                                            ccaaaggccAAGAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTT                                  >  1:4200694/10‑101 (MQ=2)                                                                              aaaggccAAGAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTG                                >  1:1821190/8‑101 (MQ=11)                                                                              aaaggccAAGAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTG                                >  1:4385898/8‑101 (MQ=11)                                                                              aaaggccAAGAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTG                                >  1:3602275/8‑101 (MQ=11)                                                                              aaaggccAAGAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTG                                >  1:2173447/8‑101 (MQ=11)                                                                              aaaggccAAGAGGGGGCAGCCCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTG                                <  1:2235162/94‑1 (MQ=0)                                                                               aaggccAAGAGGGGGCCGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGG                               <  1:1445803/95‑1 (MQ=2)                                                                               aaggccAAGAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGG                               <  1:4723515/95‑1 (MQ=11)                                                                                aggccAAGAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGC                              >  1:1888026/6‑101 (MQ=14)                                                                                aggccAAGAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGCCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGCCTTGCTTGTTTGGC                              >  2:3160924/6‑101 (MQ=9)                                                                                  gccAAGGGGGGGCAGCCCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTG                            <  1:185904/98‑1 (MQ=0)                                                                                  gccAAGAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTG                            >  2:452222/4‑101 (MQ=11)                                                                                   ccAAGGGGGGGCCGCCCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGC                           <  1:423856/99‑1 (MQ=2)                                                                                   ccAAGAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGC                           >  2:2527590/3‑101 (MQ=11)                                                                                   ccAAGAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGC                           >  1:4326601/3‑101 (MQ=11)                                                                                    cAAGAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCG                          >  2:4357261/2‑101 (MQ=11)                                                                                    cAAGAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCG                          >  1:1703283/2‑101 (MQ=11)                                                                                    cAAGAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCG                          >  2:3124385/2‑101 (MQ=11)                                                                                    cAAGAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCG                          >  2:1913628/2‑101 (MQ=11)                                                                                     AAGAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGG                         >  2:1469786/1‑101 (MQ=1)                                                                                     AAGAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGG                         >  2:3266008/1‑101 (MQ=1)                                                                                     AAGAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCCTGTTTGGGTGCGG                         >  1:2515561/1‑101 (MQ=0)                                                                                     AAGAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCNTGCTTGTTTGGCTGCGG                         >  2:1466728/1‑101 (MQ=1)                                                                                      AGAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGGTGCGGC                        >  1:3219157/1‑101 (MQ=1)                                                                                      AGAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGg                        >  1:3517360/1‑100 (MQ=1)                                                                                       GAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCG                       >  2:3172739/1‑101 (MQ=1)                                                                                       GAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCG                       >  2:273599/1‑101 (MQ=1)                                                                                        AGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTTGCTGCGGCGC                      >  2:3621880/1‑101 (MQ=1)                                                                                        AGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGGGC                      >  2:2053241/1‑101 (MQ=1)                                                                                        AGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGC                      >  1:2815314/1‑101 (MQ=1)                                                                                         GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCA                     >  1:4697442/1‑101 (MQ=1)                                                                                          GGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCATGTGCAGCGGCTTGCTTGTTCTGCTGCGGCGCcg                    >  1:4080066/1‑99 (MQ=0)                                                                                          GGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAG                    >  1:2438102/1‑101 (MQ=1)                                                                                           GGGCCGCCCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGC                   <  2:2248376/101‑1 (MQ=0)                                                                                            GGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCG                  >  1:2916298/1‑101 (MQ=1)                                                                                            GGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCCTGTTTGGCTGCGGCGCAGCG                  >  1:2659424/1‑101 (MQ=1)                                                                                             GCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGG                 >  2:4695712/1‑101 (MQ=1)                                                                                             GCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGG                 <  1:2287785/101‑1 (MQ=1)                                                                                             GCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGG                 >  2:2051791/1‑101 (MQ=1)                                                                                              ccGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGC                <  2:2101912/99‑1 (MQ=1)                                                                                              CAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGC                >  2:3777799/1‑101 (MQ=1)                                                                                              CAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGC                >  1:1456622/1‑101 (MQ=1)                                                                                               ccccCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCT               <  2:2288366/97‑1 (MQ=11)                                                                                               AGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCT               >  2:3286355/1‑101 (MQ=1)                                                                                                gccCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTA              <  2:4089098/98‑1 (MQ=11)                                                                                                gccCCCCCGGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTA              <  2:4520005/98‑1 (MQ=11)                                                                                                gccCCCCCCGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTA              <  1:4388886/98‑1 (MQ=11)                                                                                                cccCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTA              <  1:1886607/98‑1 (MQ=11)                                                                                                cccCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTA              <  2:1619673/98‑1 (MQ=11)                                                                                                cccCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTA              <  2:2168651/98‑1 (MQ=11)                                                                                                 CGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAA             >  1:2087682/1‑101 (MQ=1)                                                                                                  GCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGGTAAT            >  1:348621/1‑101 (MQ=1)                                                                                                  GCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAAT            <  1:608445/101‑1 (MQ=1)                                                                                                  GCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCCTGTTTGGCTGCGGGGCAGCGGCTGAT            >  2:3860683/1‑101 (MQ=0)                                                                                                   CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATC           <  1:4546210/101‑1 (MQ=1)                                                                                                   CCCCCCCCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATC           <  1:865498/101‑1 (MQ=0)                                                                                                                                                                                                                  TCACCCCCCGGATATTTGCACCAAGGTGATAGGCGCCCGTTATCTTGCCTCAAATATCCCGGGGGTGAATTTCGGCGCAGCCGAAAGAGGGGGCAGCGCCCCCTGCCC....................................................................................................  <  NC_014034/580995‑580888 ...................................................................................................CCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATCAGACAGAAA  >  NC_014034/2600961‑2601060 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 27 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG