New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	580888 =	193 (0.890)	58 (0.270)	17/182	20.0	0.34	intergenic (+9/‑362)	RCAP_rcc00541/RCAP_rcc00542	hypothetical protein/hypothetical protein
	?	NC_014034	2600961 =	30 (0.130)					intergenic (+23/‑118)	RCAP_rcc02424/surE	short‑chain dehydrogenase/reductase family oxidoreductase/5'‑nucleotidase SurE
Rejected: Position hash score below cutoff.

CGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGGGCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATCAGACAGAAAC  >  NC_014034/2600871‑2601061                                                                                           |                                                                                                     cGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGGCCCGCCCCCccgcctctcgcc                                                                                            >  2:4539560/1‑94 (MQ=255)                                                                        ggggcagcgcccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAg                     >  1:2438102/11‑101 (MQ=255)                                                                         gggccgcccccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGc                    <  2:2248376/92‑1 (MQ=255)                                                                          ggcagcgcccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCg                   >  1:2916298/9‑101 (MQ=255)                                                                          ggcagcgcccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCCTGTTTGGCTGCGGCGCAGCg                   >  1:2659424/9‑101 (MQ=255)                                                                           gcagcgcccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCgg                  >  2:4695712/8‑101 (MQ=255)                                                                           gcagcgcccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCgg                  >  2:2051791/8‑101 (MQ=255)                                                                           gcagcgcccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCgg                  <  1:2287785/94‑1 (MQ=255)                                                                            ccgcgcccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGc                 <  2:2101912/95‑1 (MQ=255)                                                                            cagcgcccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGc                 >  1:1456622/7‑101 (MQ=255)                                                                            cagcgcccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGc                 >  2:3777799/7‑101 (MQ=255)                                                                             cccccccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCt                <  2:2288366/96‑1 (MQ=255)                                                                             agcgcccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCt                >  2:3286355/6‑101 (MQ=255)                                                                              gcccccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTa               <  2:4089098/97‑1 (MQ=255)                                                                              gcccccccGGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTa               <  2:4520005/97‑1 (MQ=255)                                                                              gcccccccCGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTa               <  1:4388886/97‑1 (MQ=255)                                                                              ccccccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTa               <  2:1619673/97‑1 (MQ=255)                                                                              ccccccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTa               <  1:1886607/97‑1 (MQ=255)                                                                              ccccccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTa               <  2:2168651/97‑1 (MQ=255)                                                                               cgcccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTaa              >  1:2087682/4‑101 (MQ=255)                                                                               ccccacggcccccGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTaa              <  2:3681792/92‑1 (MQ=255)                                                                                gcccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGGTAAt             >  1:348621/3‑101 (MQ=255)                                                                                gcccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAAt             <  1:608445/99‑1 (MQ=255)                                                                                gcccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCCTGTTTGGCTGCGGGGCAGCGGCTGAt             >  2:3860683/3‑101 (MQ=255)                                                                                 cccccccccccGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATc            <  1:865498/94‑1 (MQ=255)                                                                                 cccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATc            <  1:4546210/100‑1 (MQ=255)                                                                                  ccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATca           <  2:389669/101‑1 (MQ=255)                                                                                    ccggCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATcaga         <  1:3750770/98‑1 (MQ=255)                                                                                    cccgCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATcaga         <  2:3280132/98‑1 (MQ=255)                                                                                    cccgCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATcaga         <  1:369415/98‑1 (MQ=255)                                                                                     cTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCCGCGGCTAATccgcc        >  1:709811/1‑97 (MQ=255)                                                                                     cTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATcagac        >  2:3620307/1‑101 (MQ=255)                                                                                     cTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATcagac        >  2:861486/1‑101 (MQ=255)                                                                                     cTGCCCCGCCGGATCCGGGGCGGACCGGGACCGCAAGAGCACACCAGAGCGCCAAGTGCAGCGGCATACTTTTTGTGCTGCCGCGCAACGGCGCATcagag        >  2:1974225/1‑100 (MQ=255)                                                                                      tcccccGCCGGATCC.GGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATcagacag      <  2:2340241/99‑1 (MQ=255)                                                                                      tGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATcagaca       <  1:4279065/101‑1 (MQ=255)                                                                                      tGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATcagaca       >  2:1435961/1‑101 (MQ=255)                                                                                      cgCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATcagaca       <  1:105000/100‑1 (MQ=255)                                                                                       gCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATcagacag      >  2:2617593/1‑101 (MQ=255)                                                                                       gCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATcagacag      <  1:281449/101‑1 (MQ=255)                                                                                       gCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATaagaaag      >  1:1682205/1‑101 (MQ=255)                                                                                       cccccGCCGGATCCGGGGCGGACGGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATcagacag      <  2:4243494/100‑1 (MQ=255)                                                                                       cccccGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATcagacag      <  1:1684511/100‑1 (MQ=255)                                                                                       cccccGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATcagacag      <  1:2766128/100‑1 (MQ=255)                                                                                        ccccGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGGGCAGCGGCTAATcagacaca     >  1:2837637/1‑99 (MQ=255)                                                                                         cccGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATCAGACAGaa    <  1:473236/101‑1 (MQ=255)                                                                                         cccGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATCAGACAGaa    <  2:2464205/101‑1 (MQ=255)                                                                                         cccGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATCAGACAGaa    <  1:317739/101‑1 (MQ=255)                                                                                          ccgccgGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATCAGACAGaaa   <  2:473015/101‑1 (MQ=255)                                                                                          ccgccgGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATCAGACAGaaa   <  1:1913740/101‑1 (MQ=255)                                                                                          ccgccgGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATCAGACAGaaa   >  1:1968375/1‑101 (MQ=255)                                                                                          ccgccgGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATCAGACAGaaa   <  1:4616420/101‑1 (MQ=255)                                                                                          ccgccgGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATCAGACAGaaa   <  1:57892/101‑1 (MQ=255)                                                                                          ccgccgGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATCAGACAGaaa   <  2:1477793/101‑1 (MQ=255)                                                                                          ccgccgGATCCGGGGCGGACCGGGTCCGCAAGGCCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATCAGACAGaaa   <  1:1860469/101‑1 (MQ=255)                                                                                           cgccgGATCCGGGGCGGACCGGGTCCGCAAGGGCACGCCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATCAGACAGAAAc  <  2:3346151/101‑1 (MQ=255)                                                                                           cgccgGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATCAGACAGAAAc  <  1:1502077/101‑1 (MQ=255)                                                                                           cgccgGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATCAGACAGAAAc  <  2:977523/101‑1 (MQ=255)                                                                                           |                                                                                                     CGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGGGCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATCAGACAGAAAC  >  NC_014034/2600871‑2601061 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG