New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1193631	21 (0.090)	25 (0.110)	9/192	23.2	0.50	intergenic (+96/‑155)	metK/trmB	methionine adenosyltransferase/tRNA (guanine‑N(7)‑)‑methyltransferase
	?	NC_014034	= 1732863	30 (0.120)					intergenic (‑287/‑116)	RCAP_rcc01601/tgt	FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase
Rejected: Position hash score below cutoff.

TCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGG..................................................................................................  >  NC_014034/1193531‑1193631 ..................................................................................................GGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAG  <  NC_014034/1732863‑1732766                                                                                                                                                                                                             AGCCGGTTTAAAAAGATCGCGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGC                                                                                                <  2:4015908/101‑1 (MQ=0)       CCGGTTTCAAAAGATCCCGGGGAAGGGGGCTTCGGCCCCTTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTc                                                                                              <  1:4190936/101‑2 (MQ=2)       CCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTc                                                                                              <  1:1860610/101‑2 (MQ=11)       CCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTc                                                                                              <  1:3243926/101‑2 (MQ=11)        cgtTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTcc                                                                                             <  2:2223784/98‑3 (MQ=14)        atcTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTcc                                                                                             <  1:4690866/98‑3 (MQ=14)        CGGTTTCAAAAGATCAGGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTcc                                                                                             <  1:4856620/101‑3 (MQ=14)        CGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTcc                                                                                             <  2:4501085/101‑3 (MQ=31)           TTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTccgcc                                                                                          <  1:3203585/101‑6 (MQ=32)           TTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCCGGGGcgtgcccc                                                                                          >  1:482876/1‑93 (MQ=9)            TTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCAgat                                                                                         >  2:4690543/1‑98 (MQ=14)               AAAAGATCGCGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCC                                                                                      <  1:1521205/101‑1 (MQ=17)                AAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCG                                                                                     <  2:1529703/101‑1 (MQ=32)                       agGGGGAAGGGGTCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCACCCCCCGCACCCCC                                                                              <  2:4984208/99‑1 (MQ=12)                                                                  gcTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCCAAAAGAAAGAAGGGCGGATTTTGGCTAGGAAAAGCGGGGCCC                                   >  2:389012/3‑101 (MQ=0)                                                                   cTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCCCCCCCCGCCCCCCCGAACAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCT                                  >  1:2118920/2‑101 (MQ=0)                                                                        GCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAACAGCGGGGCCCCTGCCT                             >  2:3335678/1‑101 (MQ=0)                                                                            CGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCCGTTG                         >  2:4201378/1‑101 (MQ=1)                                                                             GGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGAATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGA                        >  1:2298566/1‑101 (MQ=1)                                                                                      CGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGG               >  1:5009316/1‑101 (MQ=1)                                                                                        gcGCGCCCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGCA             <  2:1639461/99‑1 (MQ=1)                                                                                               CCGGGGGGGTCTTCCCCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCT      <  2:229621/101‑1 (MQ=0)                                                                                                CGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGCCTGAGGCcg     >  2:1540772/1‑99 (MQ=0)                                                                                                 GCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGC    <  2:3477643/101‑1 (MQ=1)                                                                                                  CGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCA   >  2:1246823/1‑101 (MQ=1)                                                                                                                                                                                                         TCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGG..................................................................................................  >  NC_014034/1193531‑1193631 ..................................................................................................GGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAG  <  NC_014034/1732863‑1732766 Base quality scores:  ATCG  < 3 ≤  ATCG  < 6 ≤  ATCG  < 15 ≤  ATCG  < 25 ≤  ATCG  < 39 ≤  ATCG