New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1193631	21 (0.090)	25 (0.110)	9/192	23.2	0.50	intergenic (+96/‑155)	metK/trmB	methionine adenosyltransferase/tRNA (guanine‑N(7)‑)‑methyltransferase
	?	NC_014034	= 1732863	30 (0.120)					intergenic (‑287/‑116)	RCAP_rcc01601/tgt	FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase
Rejected: Position hash score below cutoff.

TCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...GGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTCGCGGTCAGAGCCCCCGGCGGGTCGCCTTGGCAAAAGCAT  >  NC_014034/1193531‑1193731                                                                                                        |                                                                                                     tCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGCCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggg                                                                                                      <  1:4692213/101‑1 (MQ=255)     aGCCGGTTTAAAAAGATCGCGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggc                                                                                                  <  2:4015908/101‑5 (MQ=255)      gCCGGTTTCAAAAGATCACGGGGATGGGGGTTTCGGCCCCTTTTTTCATGCGTTGCAGTATATTCCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggct                                                                                                 <  2:1928264/101‑6 (MQ=25)       ccGGTTTCAAAAGATCCCGGGGAAGGGGGCTTCGGCCCCTTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggctc                                                                                                <  1:4190936/101‑7 (MQ=37)       ccGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggctc                                                                                                <  1:1860610/101‑7 (MQ=255)       ccGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggctc                                                                                                <  1:3243926/101‑7 (MQ=255)        cgttttCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggctcc                                                                                               <  2:2223784/98‑8 (MQ=255)        cGGTTTCAAAAGATCAGGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggctcc                                                                                               <  1:4856620/101‑8 (MQ=255)        cGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggctcc                                                                                               <  2:4501085/101‑8 (MQ=255)        atctttCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggctcc                                                                                               <  1:4690866/98‑8 (MQ=255)           tttCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggctccgcc                                                                                            <  1:3203585/101‑11 (MQ=255)           tttCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...cggggcgtgcccc                                                                                            >  1:482876/1‑91 (MQ=38)               aaaaGATCGCGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGcccccc                                                                                           <  1:1521205/101‑1 (MQ=25)               aaaaGATCCGGGGGAGGGGGGCTTCGGCCCCCTTTTTCATGCGTGGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGcccccc                                                                                           <  2:2547333/101‑1 (MQ=18)               aaaaGATCAGGGGGAAGGGGGCTTCGCCCCCTTTTTTCATGCGTTGCAGGATATTTCCCCTCGGGCAAGCCCGGGGCGACCCGCGGGGGGCTCCGcccccc                                                                                           <  1:73899/101‑1 (MQ=21)                aaaGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCg                                                                                          <  2:1529703/101‑1 (MQ=25)                 aaGATCCCGGGGAAGGGGGCTTCGCCCCCCTTTTTCATGCGTTGCAGGATATTCCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGc                                                                                         <  2:2074709/101‑1 (MQ=21)                   gATCGCGGGGAGGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCCCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCAc                                                                                       <  1:209187/101‑1 (MQ=21)                    aTCGCGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCAcc                                                                                      <  1:1384184/101‑1 (MQ=21)                     tCACGGGGAAGGGGGCTTCGCCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCAccc                                                                                     <  1:1979672/101‑1 (MQ=21)                       agggggAAGGGGTCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCACCCCCCGCAccccc                                                                                   <  2:4984208/99‑1 (MQ=18)                                 gggCTTCGCCCCCTTTTTTCATGCGTTGCAGGATATTTCGCCCCGGGCAAGCCCGAGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTAttt                                                                         <  1:1315463/101‑1 (MQ=17)                                 gggCTTCGCCCCCTTTTTTCAGGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTAttt                                                                         <  2:4006309/101‑1 (MQ=14)                                        ggCCCCCTTTTTCCTGGGTTGGAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAg                                                                  <  2:482811/101‑1 (MQ=11)                                           ccctTTTTTCATGCGTGGCAGGATATTTCGCCGCGGGCAAGCCCGGGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGaa                                                               <  1:1252030/101‑1 (MQ=11)                                             ctttttcCATGCGTGGAAGAATATTTCGCCTCGGGAAAGCCGGAGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGaaaa                                                             <  2:3980831/99‑1 (MQ=11)                                                 tttCATGCGTGGCAGGATATTTCGCCTGGGGCAACCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAgcgc                                                         <  2:775831/101‑1 (MQ=11)                                                    cATGCGTTGCAGGATTTTTCGCCTCGGGCAAGCCCGGGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAg                                                      <  1:3128465/101‑1 (MQ=11)                                                       gCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGAcc                                                   <  2:3339279/101‑1 (MQ=14)                                                         gtggCAGGATTTTCCCCCGGGGGCAACCCCGGGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCgg                                                 <  2:3534444/98‑1 (MQ=0)                                                                      tCGCCTCGGGCAAGCCGGGGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTCGCGGt                                    <  1:496700/101‑1 (MQ=14)                                                                           ccGGGCAGCCCGGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTCGCGGTCagag                               <  2:3912565/100‑1 (MQ=14)                                                                                            gccccgcggggggCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTCGCGGTCAGAGCCCCCGGCGGGTCGCCt              <  2:1214918/91‑1 (MQ=255)                                                                                             ccccgcggggggCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTCGCGGTCAGAGCCCCCGGCGGGTCGCCtt             <  2:2506953/92‑1 (MQ=255)                                                                                                    gggggCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTCGCGGTCAGAGCCCCCGGCGGGTCGCCTTGGCaaaa      >  2:2467895/3‑101 (MQ=255)                                                                                                       ggCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTCGCGGTCAGAGCCCCCGGCGGGTCGCCTTGGCAAAAGCa   >  2:2990846/1‑101 (MQ=255)                                                                                                        gCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTCGCGGTCAGAGCCCCCGGCGGGTCGCCTTGGCAAAAGCAt  >  2:324392/1‑101 (MQ=255)                                                                                                        |                                                                                                     TCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...GGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTCGCGGTCAGAGCCCCCGGCGGGTCGCCTTGGCAAAAGCAT  >  NC_014034/1193531‑1193731 Base quality scores:  ATCG  < 3 ≤  ATCG  < 6 ≤  ATCG  < 15 ≤  ATCG  < 27 ≤  ATCG  < 39 ≤  ATCG