New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1217350 =	181 (0.770)	14 (0.060)	4/192	27.1	0.12	intergenic (+73/+155)	gcvP/fabH1	glycine dehydrogenase/3‑oxoacyl‑ACP synthase III
	?	NC_014034	2747887 =	33 (0.130)					intergenic (‑219/+74)	RCAP_rcc02553/RCAP_rcc02554	hypothetical protein/NmrA family protein
Rejected: Position hash score below cutoff.

GTGCAACGCCGCCCCAAGACCGTTTGCCCCAAGCCCGAACAGAGGCCGGCGCCCGTCCCGGCGGGCGAGAAGCGCCCGCCGAGGGCGGGGCGGGCGCTGGCCGA....................................................................................................  <  NC_014034/1217453‑1217350 ....................................................................................................CCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGCCGCCCGCACGGTTT  >  NC_014034/2747887‑2747986                                                                                                                                                                                                                                                                                                  cCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCC                     >  1:3591268/2‑101 (MQ=0)                                                                                     cCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCC                     <  1:880418/100‑1 (MQ=0)                                                                                     cCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCC                     >  2:363469/2‑101 (MQ=0)                                                                                      CGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCA                    >  2:4089283/1‑101 (MQ=0)                                                                                      CGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCA                    >  2:4397434/1‑101 (MQ=0)                                                                                      CGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCA                    >  2:77048/1‑101 (MQ=0)                                                                                       GGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAG                   >  1:3730075/1‑101 (MQ=0)                                                                                        ggcCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGC                  >  1:1597133/4‑101 (MQ=0)                                                                                        ggcCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGC                  >  2:2131794/4‑101 (MQ=0)                                                                                          cCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGC                >  2:1302481/2‑101 (MQ=1)                                                                                           CGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGCC               >  1:850567/1‑101 (MQ=1)                                                                                            GGGCGCTGCCCGAGGGCCTTTGGGCCCTCGCGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCCAGGTCAGCTCATGCCAGCGCCG              >  2:850825/1‑101 (MQ=0)                                                                                             GGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGCCGC             >  1:445109/1‑101 (MQ=1)                                                                                             GGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGCCGC             >  2:168472/1‑101 (MQ=1)                                                                                                                                                                                                              GTGCAACGCCGCCCCAAGACCGTTTGCCCCAAGCCCGAACAGAGGCCGGCGCCCGTCCCGGCGGGCGAGAAGCGCCCGCCGAGGGCGGGGCGGGCGCTGGCCGA....................................................................................................  <  NC_014034/1217453‑1217350 ....................................................................................................CCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGCCGCCCGCACGGTTT  >  NC_014034/2747887‑2747986 Base quality scores:  ATCG  < 3 ≤  ATCG  < 21 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 40 ≤  ATCG